Phage Name: Finny

Gene Number: 1
dcedwards Added HHPRED Evidence Accession: PF08954.11 Description: Trimer_CC ; Trimerisation motif Query Range: (33-67) Target Range: (9-43) at 2019-04-05 22:08:07.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83402 Query Range: (1-167) Target Range: (3-169) at 2019-04-05 22:07:37.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 22:06:19.0
abbigalr changed the start site to 7 at 2019-02-06 10:23:49.0
michaelaa24 changed starterator analysis to SS at 2019-02-06 09:07:37.0
michaelaa24 changed starterator analysis to NA at 2019-02-06 09:03:36.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:24:35.0
stacyluka changed synteny to The gene is found at the start of the sequence. Followed by a gene for a terminase. The bacteriophages in cluster EA2 with a similar gene were Andromedas, ColaCorta, and Eleri accodring to Blastp. at 2019-01-29 03:42:11.0
stacyluka changed synteny to The gene is found at the start of the sequence. Followed by the gene for a terminase. The bacteriophages in cluster EA2 with a similar gene were Andromedas, ColaCorta, and Eleri accodring to Blastp. at 2019-01-29 03:40:33.0
dcedwards changed the gene function to NKF at 2019-01-22 14:56:53.0
michaelaa24 changed synteny to The gene is found at the start of the sequence. Followed by the gene for a terminase. The bacteria in cluster EA2 with a smilar gene were Andromedas, ColaCorta, and Eleri accodring to Blastp. at 2019-01-19 14:22:18.0
michaelaa24 changed synteny to This gene is located in the very begining of the sequence and is followed by the gene for a terminase. The bacteria in the same cluster that had a smilar gene were Andromedas, ColaCorta, and Eleri accodring to Blastp. at 2019-01-19 14:16:55.0
michaelaa24 changed synteny to This gene is located in the very begining of the sequence and is followed by the gene for a terminase. The bacteria in the same cluster that had a smilar gene were Andromedas, ColaCorta, and Eleri. at 2019-01-19 14:05:18.0
michaelaa24 changed synteny to This gene is located in the very begining of the sequence and is followed by the gene for a terminase. The bacteria in the same cluster that had a smilar gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:51:53.0
michaelaa24 changed synteny to This gene is located in the very begining of the sequence and is followed by the gene for a terminase. The bacteria in the same cluster that had this gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:50:26.0
michaelaa24 changed synteny to This gene is found in the very begining of the sequence and is followed by a terminase. The bacteria in the same cluster that had this gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:48:31.0
michaelaa24 changed synteny to This gene is found in the very begining of the sequence. The bacteria in the same cluster that had this gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:47:53.0
michaelaa24 changed synteny to This gene is found The bacteria in the same cluster that had this gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:46:00.0
michaelaa24 changed synteny to This is a structural protien found. The bacteria in the same cluster that had this gene were Eleri, ColaCorta, and Andromedas. at 2019-01-19 13:45:02.0
michaelaa24 Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 13:41:06.0
michaelaa24 Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 13:41:06.0
michaelaa24 Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 13:41:06.0
michaelaa24 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 13:41:06.0
michaelaa24 changed synteny to Three of the Bacteria the same cluster have this gene. at 2019-01-19 13:41:06.0
michaelaa24 changed the gene function to Hypothetical Protein at 2019-01-19 10:27:29.0
michaelaa24 changed note to According to Blastp, this is a hypothetical protien with no known function. at 2019-01-19 10:27:29.0
michaelaa24 changed note to Hypotheical protien according to at 2019-01-19 10:05:21.0
shey_98 changed the start site to 1 at 2019-01-19 05:56:20.0
michaelaa24 changed the gene function to Unknown at 2019-01-18 10:15:06.0
michaelaa24 changed the coding capacity to yes at 2019-01-18 10:15:06.0
michaelaa24 changed the start site to 1 at 2019-01-18 10:12:53.0
michaelaa24 changed the start site to 7 at 2019-01-18 10:12:44.0
michaelaa24 changed the start site to 7 at 2019-01-18 10:07:31.0
michaelaa24 changed the start site to 1 at 2019-01-18 10:07:24.0

Gene Number: 2
dcedwards Added HHPRED Evidence Accession: PF03354.15 Description: Terminase_1 ; Phage Terminase Query Range: (34-476) Target Range: (1-466) at 2019-04-05 22:15:09.0
dcedwards Added CDD Evidence Accession: COG5362 Query Range: (255-469) Target Range: (1-187) at 2019-04-05 22:11:29.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48574 Query Range: (1-482) Target Range: (1-482) at 2019-04-05 22:11:29.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70555 Query Range: (1-482) Target Range: (1-482) at 2019-04-05 22:11:29.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: terminase at 2019-04-05 22:11:07.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:25:05.0
stacyluka changed note to This is most likely a large terminase according to HHPred. The large terminase is responsible for the ATP powered translocation of the DNA.

Blastp was unclear on if this was a small or large terminase. A small terminase initiates packaging of the viral genome. at 2019-01-29 03:53:31.0
stacyluka changed synteny to This terminase gene is located between a hypothetical protein gene and the gene for a portal protein. Structurally, the terminase is typically found near the portal due to its role in the packaging/translocation of the viral DNA. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa according to Blastp. at 2019-01-29 03:53:31.0
aballard changed note to This is most likely a large terminase according to HHPred. The large terminase is responsible for the ATP powered translocation of the DNA.

Blastp was unclear on if this was a small or large terminase. at 2019-01-26 02:38:36.0
michaelaa24 changed synteny to This gene is located between the gene for a hypothetical protien and the gene for a portal protien.The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:31:51.0
michaelaa24 changed synteny to This gene is located at the start of the sequence after the gene for a hypothetical protien. Followed by the gene for a portal protien. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:25:59.0
michaelaa24 changed synteny to This gene is located at the start of the sequence after the gene for a hypothetical protien. Following is the gene for a portal protien. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:23:34.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a hypothetical protien. It is followed by the gene for a portal protien. The bacteria in cluster EA2 that have a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:17:09.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a hypothetical protien. It is followed by the gene for a portal protien. The bacteria in cluster EA2 that have a similar gene are Andromedas, ColaCorta, Eleri, and Sansa. at 2019-01-19 14:04:43.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence, and is followed by a p at 2019-01-19 13:49:17.0
michaelaa24 changed synteny to at 2019-01-19 13:28:34.0
michaelaa24 changed synteny to The at 2019-01-19 13:28:22.0
michaelaa24 changed note to This is most likey a large terminase according to HHPred. The large terminase is responsible for the ATP powered translocation of the DNA.

Blastp was unclear on if this was a small or large terminase. at 2019-01-19 10:11:18.0
michaelaa24 changed note to This is most likey a large terminase according to HHPred. There are two compents to a terminase, a small and large terminase.The large terminase is responsible for the ATP powered translocation of the DNA. The two terminases together are ultamitley responsible for DNA Packaging.

Blast was unclear of which terminase this could possibly be. at 2019-01-19 10:09:34.0
michaelaa24 changed note to This is most likey a terminase according to HHPred and Blast. There are two compents to a terminase, a small and large terminase. There is evidence that this is the large subunit. The large terminase is responsible for the ATP powered translocation of the DNA. The two terminases together are ultamitley responsible for DNA Packaging. at 2019-01-19 10:06:18.0
michaelaa24 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 09:56:13.0
michaelaa24 Added HHPRED Evidence Accession: 3EZK_A Description: DNA packaging protein Gp17; pentameric motor, DNA packaging, Alternative; 34.0A {Bacteriophage T4} Query Range: (11-479) Target Range: (107-560) at 2019-01-19 09:56:13.0
michaelaa24 Added HHPRED Evidence Accession: 4BIJ_D Description: DNA MATURASE B; HYDROLASE, ATPASE, DNA TRANSLOCATION, SINGLE-PARTICLE; 16.0A {ENTEROBACTERIA PHAGE T7} Query Range: (1-433) Target Range: (1-476) at 2019-01-19 09:56:13.0
michaelaa24 changed note to This is most likey a terminase. There are two compents to a terminase, a small and large terminase. There is evidence that this is the large subunit. The large terminase is responsible for the ATP powered translocation of the DNA. The two terminases together are ultamitley responsible for DNA Packaging. at 2019-01-19 09:56:13.0
michaelaa24 Added Phages DB Evidence Phage Name: Sansa Function: terminase at 2019-01-18 10:31:17.0
michaelaa24 Added Phages DB Evidence Phage Name: ColaCorta Function: terminase at 2019-01-18 10:31:17.0
michaelaa24 Added Phages DB Evidence Phage Name: Eleri Function: terminase at 2019-01-18 10:31:17.0
michaelaa24 Added Phages DB Evidence Phage Name: Andromedas Function: terminase at 2019-01-18 10:31:17.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH70680 Query Range: (1-482) Target Range: (1-482) at 2019-01-18 10:31:17.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH48574 Query Range: (1-482) Target Range: (1-482) at 2019-01-18 10:31:17.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH70555 Query Range: (1-482) Target Range: (1-482) at 2019-01-18 10:31:17.0
michaelaa24 changed the gene function to terminase at 2019-01-18 10:31:17.0
michaelaa24 changed the coding capacity to yes at 2019-01-18 10:31:17.0

Gene Number: 3
dcedwards Removed NCBI BLAST Evidence Accession: AXH48575 Query Range: (1-453) Target Range: (1-453) at 2019-04-05 22:31:19.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83341 Query Range: (1-454) Target Range: (1-454) at 2019-04-05 22:31:19.0
dcedwards Added HHPRED Evidence Accession: 5A20_A Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE; 7.6A {BACILLUS PHAGE SPP1} Query Range: (6-405) Target Range: (25-459) at 2019-04-05 22:31:19.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: portal protein at 2019-04-05 22:13:47.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:25:55.0
stacyluka changed note to This may be a portal protien according to HHpred and Blastp. Portal protiens form a hole/portal that allows for DNA packaging and ejection. These protiens also form junctions between the capsid and tail protiens.

Structurally, would expect tail proteins to be found close to the portal protein. at 2019-01-29 04:11:54.0
stacyluka changed synteny to This gene is located between the gene for a terminase and the gene for a capsid maturation protease. There is only one gene for the portal protein because there is only one portal between the capsid and the tail proteins. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-29 03:58:31.0
stacyluka changed synteny to This gene is located between the gene for a terminase and the gene for a capsid maturation protease. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-29 03:54:33.0
michaelaa24 Removed Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 14:34:00.0
michaelaa24 changed synteny to This gene is located between the gene for a terminase and the gene for a capsid marturation protease. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:32:32.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence after the gene for a terminase. Followed by the gene for a capsid marturation protease. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:25:27.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence after the gene for a terminase.Followed by the gene for a capsid marturation protease. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:25:17.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence after the gene for a terminase. It is followed by the gene for a capsid marturation protease. The bacteria in cluster EA2 with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:24:29.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a terminase. It is followed by the gene for a capsid marturation protease. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:17:26.0
michaelaa24 Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 14:12:09.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a terminase. It is followed by the gene for a capsid marturation protease. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa. at 2019-01-19 14:12:09.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a terminase. It is followed by the gene for a capsid marturation protease. The bacterium in cluster EA2 that has a similar gene is Eleri. at 2019-01-19 14:10:48.0
michaelaa24 Added Phages DB Evidence Phage Name: Andromedas Function: portal protein at 2019-01-19 10:18:02.0
michaelaa24 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 10:16:29.0
michaelaa24 changed note to This may be a portal protien according to HHpred and Blastp. Portal protiens form a hole/portal that allows for DNA packaging and ejection. These protiens also form junctions between the capsid and tail protiens. at 2019-01-19 10:16:29.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH48575 Query Range: (1-453) Target Range: (1-453) at 2019-01-19 06:38:24.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH70556 Query Range: (1-453) Target Range: (1-453) at 2019-01-19 06:38:24.0
michaelaa24 Added NCBI BLAST Evidence Accession: AUX83341 Query Range: (1-454) Target Range: (1-454) at 2019-01-19 06:38:24.0
michaelaa24 Added HHPRED Evidence Accession: 5A20_B Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE; 7.6A {BACILLUS PHAGE SPP1} Query Range: (24-448) Target Range: (43-501) at 2019-01-19 06:38:24.0
michaelaa24 Added HHPRED Evidence Accession: 2JES_G Description: PORTAL PROTEIN, UNIDENTIFIED FRAGMENT OF; BACTERIOPHAGE SPP1, DNA TRANSLOCATION, MOLECULAR; HET: CA, HG; 3.4A {BACTERIOPHAGE SPP1} Query Range: (24-448) Target Range: (43-501) at 2019-01-19 06:38:24.0
michaelaa24 changed note to This may be a portal protien. Portal protiens form a hole/portal that allows for DNA packaging and ejection. These protiens also form junctions between the capsid and tail protiens. at 2019-01-19 06:38:24.0
michaelaa24 Added Phages DB Evidence Phage Name: Sansa Function: portal protein at 2019-01-18 10:39:13.0
michaelaa24 Added Phages DB Evidence Phage Name: ColaCorta Function: portal protein at 2019-01-18 10:39:13.0
michaelaa24 Added Phages DB Evidence Phage Name: Eleri Function: portal protein at 2019-01-18 10:39:13.0
michaelaa24 changed the gene function to portal protein at 2019-01-18 10:39:13.0
michaelaa24 changed the coding capacity to yes at 2019-01-18 10:39:13.0

Gene Number: 4
dcedwards Added CDD Evidence Accession: pfam04233 Query Range: (85-181) Target Range: (6-110) at 2019-04-05 22:44:49.0
dcedwards Added HHPRED Evidence Accession: PF04233.14 Description: Phage_Mu_F ; Phage Mu protein F like protein Query Range: (81-181) Target Range: (2-107) at 2019-04-05 22:44:49.0
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: capsid maturation protease at 2019-04-05 22:43:52.0
dcedwards Added Phages DB Evidence Phage Name: Greys Function: MuF-like minor capsid protein at 2019-04-05 22:43:52.0
michaelaa24 changed starterator analysis to SS at 2019-02-05 12:13:45.0
stacyluka changed synteny to This gene is located between the gene for a portal protein and the gene for a scaffolding protein. There is only one gene for the capsid maturation protease. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa according to Blastp. at 2019-01-29 04:00:06.0
michaelaa24 changed synteny to This gene is located between the gene for a portal protien and the gene for a scaffolding protien. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:33:14.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a portal protien. It is followed by the gene for a scaffolding protien. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa accodring to Blastp. at 2019-01-19 14:17:56.0
michaelaa24 Added Phages DB Evidence Phage Name: ColaCorta Function: capsid maturation protease at 2019-01-19 14:16:01.0
michaelaa24 Added Phages DB Evidence Phage Name: Andromedas Function: capsid maturation protease at 2019-01-19 14:16:01.0
michaelaa24 Removed Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 14:16:01.0
michaelaa24 changed synteny to This gene is located at the begining of the sequence following the gene for a portal protien. It is followed by the gene for a scaffolding protien. The bacteria in this cluster with a similar gene are Andromedas, ColaCorta, Eleri, and Sansa. at 2019-01-19 14:16:01.0
michaelaa24 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 14:13:06.0
michaelaa24 changed note to Most likely a capsid maturation protease according to Blastp. HHpred concluded a 99.55% probablity of this being a capsid maturation protease, and a 99.67% probablity of this being a MuF-like fusion protien.
The capsid maturation protease is responsible for the the cleaving of unused areas of major capsid protiens after they have been folded. This cleaving, or proteolysis leads to the major capsid protien becoming mature and functional. at 2019-01-19 10:20:41.0
michaelaa24 Added Phages DB Evidence Phage Name: Eleri Function: capsid maturation protease at 2019-01-19 06:39:10.0
michaelaa24 Added HHPRED Evidence Accession: PF04233.13 Description: Phage_Mu_F ; Phage Mu protein F like protein Query Range: (84-181) Target Range: (5-107) at 2019-01-19 06:39:10.0
michaelaa24 changed the gene function to capsid maturation protease at 2019-01-19 06:09:51.0
michaelaa24 changed note to Most likely a capsid maturation protease. The capsid maturation protease is responsible for the the cleaving of unused areas of major capsid protiens after they have been folded. This cleaving, or proteolysis leads to the major capsid protien becoming mature and functional. at 2019-01-19 06:09:51.0
michaelaa24 changed the gene function to capsid maturation protease and MuF-like fusion protein at 2019-01-19 05:46:13.0
michaelaa24 changed note to The capsid maturation protease is responsible for the the cleaving off areas of major capsid protiens. This cleaving, or proteolysis leads to the major capsid protien becoming mature and functional. at 2019-01-19 05:46:13.0
michaelaa24 Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-18 14:26:24.0
michaelaa24 Added Phages DB Evidence Phage Name: Sansa Function: capsid maturation protease at 2019-01-18 14:26:24.0
michaelaa24 Added NCBI BLAST Evidence Accession: AXH48576 Query Range: (1-238) Target Range: (1-238) at 2019-01-18 14:26:24.0
michaelaa24 Added HHPRED Evidence Accession: PF06152.10 Description: Phage_min_cap2 ; Phage minor capsid protein 2 Query Range: (84-187) Target Range: (156-295) at 2019-01-18 14:26:24.0
michaelaa24 changed the gene function to capsid maturation protease at 2019-01-18 14:26:24.0
michaelaa24 changed the coding capacity to yes at 2019-01-18 14:26:24.0

Gene Number: 5
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: scaffolding protein at 2019-04-05 23:12:24.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83343 Query Range: (1-191) Target Range: (18-208) at 2019-04-05 23:12:24.0
dcedwards Added HHPRED Evidence Accession: PF06810.11 Description: Phage_GP20 ; Phage minor structural protein GP20 Query Range: (70-161) Target Range: (14-132) at 2019-04-05 23:12:24.0
shey_98 changed the coding capacity to yes at 2019-02-05 23:29:00.0
shey_98 changed starterator analysis to SS at 2019-02-05 23:29:00.0
shey_98 changed the start site to 4269 at 2019-02-05 23:28:09.0
stacyluka Added Phages DB Evidence Phage Name: Sansa Function: scaffolding protein at 2019-01-29 04:07:06.0
stacyluka Removed Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-29 04:07:06.0
stacyluka changed note to The other members of the EA2 subcluster had a similar gene cited as a scaffolding protein. The scaffolding protein plays a role in viral assembly. at 2019-01-29 04:07:06.0
stacyluka changed synteny to This gene is located between the gene for the capsid maturation protease and the gene for the major capsid protein. at 2019-01-29 04:07:06.0
michaelaa24 changed synteny to capsid maturation protease, Major capsid protein
Follows a capsid maturation and is followed by a major capsid protien at 2019-01-27 11:07:26.0
michaelaa24 changed synteny to capsid maturation protease, Major capsid protein
Follows a capsid maturation and is at 2019-01-27 11:06:22.0
shey_98 changed synteny to capsid maturation protease, Major capsid protein at 2019-01-19 06:59:47.0
shey_98 Added Phages DB Evidence Phage Name: Eleri Function: scaffolding protein at 2019-01-19 06:50:42.0
shey_98 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 06:50:42.0
shey_98 Added Phages DB Evidence Phage Name: Andromedas Function: scaffolding protein at 2019-01-19 06:50:09.0
shey_98 Added Phages DB Evidence Phage Name: ColaCorta Function: scaffolding protein at 2019-01-19 06:50:09.0
shey_98 Added NCBI BLAST Evidence Accession: AUX83343 Query Range: (1-208) Target Range: (1-208) at 2019-01-19 06:50:09.0
shey_98 changed the gene function to scaffolding protein at 2019-01-19 06:50:09.0
shey_98 changed synteny to capsid maturation protease at 2019-01-19 06:50:09.0
shey_98 changed the start site to 4218 at 2019-01-19 05:59:49.0

Gene Number: 6
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: major capsid protein at 2019-04-05 23:13:19.0
dcedwards Added CDD Evidence Accession: TIGR01554 Query Range: (1-288) Target Range: (105-374) at 2019-04-05 23:13:19.0
dcedwards Added HHPRED Evidence Accession: 6B0X_E Description: Major head protein, Scaffold protein; major capsid protein, HK97-like fold; 3.72A {Staphylococcus phage 80alpha} Query Range: (2-313) Target Range: (28-317) at 2019-04-05 23:13:19.0
shey_98 changed the coding capacity to yes at 2019-02-05 23:31:06.0
shey_98 changed starterator analysis to SS at 2019-02-05 23:31:06.0
stacyluka changed note to Other members of the EA2 subluster cited the function of a similar gene as a major capsid protein. at 2019-01-29 04:10:25.0
stacyluka changed synteny to This gene for the major capsid protein is found between the genes for a scaffolding protein and 6 hypothetical proteins. at 2019-01-29 04:10:25.0
faith changed synteny to follows a scaffolding protien and is followed by 6 hypothetical protiens. at 2019-01-27 15:13:49.0
michaelaa24 changed synteny to scaffolding protein
follows a scaffolding protien and is followed by 6 hypothetical protiens. at 2019-01-27 11:10:45.0
shey_98 Added NCBI BLAST Evidence Accession: AXH70559 Query Range: (1-313) Target Range: (1-313) at 2019-01-19 06:59:09.0
shey_98 changed the gene function to major capsid protein at 2019-01-19 06:59:09.0
shey_98 changed synteny to scaffolding protein at 2019-01-19 06:59:09.0
shey_98 Added Phages DB Evidence Phage Name: Andromedas Function: major capsid protein at 2019-01-19 06:57:23.0
shey_98 Added Phages DB Evidence Phage Name: ColaCorta Function: major capsid protein at 2019-01-19 06:57:23.0
shey_98 Added Phages DB Evidence Phage Name: Eleri Function: major capsid protein at 2019-01-19 06:57:23.0

Gene Number: 7
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:14:05.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83345 Query Range: (2-82) Target Range: (4-84) at 2019-04-05 23:14:05.0
dcedwards Added HHPRED Evidence Accession: 2APL_A Description: hypothetical protein PG0816; Structural genomics, Porphyromonas gingivalis, PSI; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1 Query Range: (6-46) Target Range: (18-55) at 2019-04-05 23:14:05.0
shey_98 changed the coding capacity to yes at 2019-02-05 23:31:57.0
shey_98 changed starterator analysis to SS at 2019-02-05 23:31:57.0
stacyluka changed note to Other members of the EA2 subcluster have not cited a known function for this gene. at 2019-01-29 04:14:11.0
stacyluka changed synteny to This gene is between the gene for the major capsid protein and the genes for 5 hypothetical proteins. at 2019-01-29 04:14:11.0
faith changed synteny to follows a major capsid protien and is followed by 5 hypothetical protiens. at 2019-01-27 15:14:13.0
michaelaa24 changed synteny to major capsid protein
follows a major capsid protien and is followed by 5 hypothetical protiens. at 2019-01-27 11:11:41.0
dcedwards changed the gene function to NKF at 2019-01-22 14:57:13.0
shey_98 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 07:10:30.0
shey_98 Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 07:10:30.0
shey_98 Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 07:10:30.0
shey_98 Added NCBI BLAST Evidence Accession: AXH70560 Query Range: (1-82) Target Range: (1-82) at 2019-01-19 07:10:30.0
shey_98 Added NCBI BLAST Evidence Accession: AUX83345 Query Range: (2-82) Target Range: (4-84) at 2019-01-19 07:10:30.0
shey_98 changed the gene function to hypothetical protein at 2019-01-19 07:10:30.0
shey_98 changed synteny to major capsid protein at 2019-01-19 07:10:30.0

Gene Number: 8
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:14:27.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48580 Query Range: (1-140) Target Range: (1-140) at 2019-04-05 23:14:27.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83346 Query Range: (1-140) Target Range: (1-140) at 2019-04-05 23:14:27.0
dcedwards Added HHPRED Evidence Accession: PF14081.6 Description: DUF4262 ; Domain of unknown function (DUF4262) Query Range: (34-48) Target Range: (109-123) at 2019-04-05 23:14:27.0
aballard changed the coding capacity to yes at 2019-02-05 12:13:31.0
aballard changed starterator analysis to SS at 2019-02-05 12:13:31.0
stacyluka changed note to Other members of the EA2 subcluster have not cited a known function for this gene. at 2019-01-29 04:15:51.0
stacyluka changed synteny to This gene is between a genes for a hypothetical protein. at 2019-01-29 04:15:29.0
faith changed synteny to Follows a hypothetical protien, and is followed by five hypothetical protiens. at 2019-01-27 15:14:28.0
michaelaa24 changed synteny to hypothetical protein, hypothetical protein
Follows a hypothetical protien, and is followed by five hypothetical protiens. at 2019-01-27 13:06:16.0
dcedwards changed the gene function to NKF at 2019-01-22 14:57:25.0
shey_98 Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 07:21:39.0
shey_98 Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 07:21:39.0
shey_98 Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 07:21:39.0
shey_98 Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 07:21:39.0
shey_98 Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 07:21:39.0
shey_98 Added NCBI BLAST Evidence Accession: AXH70561 Query Range: (1-140) Target Range: (1-140) at 2019-01-19 07:21:39.0
shey_98 Added NCBI BLAST Evidence Accession: AUX83346 Query Range: (1-140) Target Range: (1-140) at 2019-01-19 07:21:39.0
shey_98 Added NCBI BLAST Evidence Accession: AXH48580 Query Range: (1-140) Target Range: (1-140) at 2019-01-19 07:21:39.0
shey_98 changed the gene function to Hypothetical Protein at 2019-01-19 07:21:39.0
shey_98 changed synteny to hypothetical protein, hypothetical protein at 2019-01-19 07:21:39.0

Gene Number: 9
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-04-05 23:15:21.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83347 Query Range: (1-136) Target Range: (1-136) at 2019-04-05 23:15:21.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70562 Query Range: (1-136) Target Range: (1-136) at 2019-04-05 23:15:21.0
dcedwards Added HHPRED Evidence Accession: 3F3B_A Description: Phage-like element PBSX protein xkdH; NESG X-Ray SR362 P54328 Structure; HET: PO4; 2.5A {Bacillus subtilis} Query Range: (15-89) Target Range: (3-91) at 2019-04-05 23:15:21.0
aballard changed starterator analysis to SS at 2019-02-05 09:50:08.0
aballard changed starterator analysis to NI at 2019-02-05 09:50:01.0
aballard changed the coding capacity to yes at 2019-02-05 09:49:16.0
aballard changed starterator analysis to SS at 2019-02-05 09:49:16.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and Colacorta. Gene is located after two other hypothetical proteins and followed by three more. at 2019-01-26 02:54:47.0
aballard Added NCBI BLAST Evidence Accession: AUX83347 Query Range: (1-136) Target Range: (1-136) at 2019-01-26 02:42:31.0
aballard Added NCBI BLAST Evidence Accession: AXH70562 Query Range: (1-136) Target Range: (1-136) at 2019-01-26 02:42:31.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical protein found in Sansa, Eleri, and Colacorta. Gene is located after two other hypothetical proteins and followed by three more. at 2019-01-26 02:42:31.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical protein found in Sansa. Gene is located after two other hypothetical proteins and followed by three more. at 2019-01-26 02:41:25.0
dcedwards changed the gene function to NKF at 2019-01-22 14:57:42.0
aballard changed note to Predicted hypothetical protein with a currently unknown function. at 2019-01-18 10:07:05.0
aballard Added NCBI BLAST Evidence Accession: AXH48581 Query Range: (1-136) Target Range: (1-136) at 2019-01-18 09:47:24.0
aballard changed the gene function to Hypothetical Protien at 2019-01-18 09:47:24.0
aballard changed note to Predicted hypothetical protein of currently unknown function. at 2019-01-18 09:47:24.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical protein found in Sansa. Gene is located near at 2019-01-18 09:47:24.0

Gene Number: 10
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:16:45.0
dcedwards Added CDD Evidence Accession: pfam04883 Query Range: (11-82) Target Range: (2-79) at 2019-04-05 23:16:45.0
dcedwards Added HHPRED Evidence Accession: PF04883.12 Description: HK97-gp10_like ; Bacteriophage HK97-gp10, putative tail-component Query Range: (6-82) Target Range: (1-73) at 2019-04-05 23:16:45.0
aballard changed the coding capacity to yes at 2019-02-05 09:51:38.0
aballard changed starterator analysis to SS at 2019-02-05 09:51:38.0
aballard changed synteny to Matches to HK97-gp10, so should be annotated as a hypothetical protein. Currently a hypothetical protein of unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and Colacorta. Gene is located after three other hypothetical proteins and followed by two more hypothetical proteins. at 2019-01-26 02:54:58.0
aballard changed synteny to Matches to HK97-gp10, so should be annotated as a hypothetical protein. Currently a hypothetical protein of unknown function, similar to the hypothetical protein found in Sansa, Eleri, and Colacorta. Gene is located after three other hypothetical proteins and followed by two more hypothetical proteins. at 2019-01-26 02:52:52.0
dcedwards changed the gene function to NKF at 2019-01-22 15:09:41.0
dcedwards changed synteny to Matches to HK97-gp10, so should be annotated as a hypothetical protein at 2019-01-22 15:09:41.0
dcedwards changed the gene function to minor capsid protein at 2019-01-22 15:01:41.0
aballard changed the gene function to Minor capsid protein at 2019-01-18 10:10:32.0
aballard changed note to Possible minor capsid protein. at 2019-01-18 10:10:32.0
aballard changed synteny to These gene is located in the first section of the virus, where structural proteins are expected. It also matches with a minor capsid protein of another virus. It was found near at 2019-01-18 10:10:32.0
aballard Added NCBI BLAST Evidence Accession: AXH70563 Query Range: (1-115) Target Range: (1-115) at 2019-01-18 10:06:35.0
aballard Added HHPRED Evidence Accession: PF11114.7 Description: Minor_capsid_2 ; Minor capsid protein Query Range: (23-111) Target Range: (16-114) at 2019-01-18 10:06:35.0
aballard changed the gene function to minor capsid protein at 2019-01-18 10:06:35.0
aballard changed note to Possible minor capsid protein, at 2019-01-18 10:06:35.0
aballard Added TmHmm evidence at 2019-01-18 10:06:35.0

Gene Number: 11
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:17:53.0
dcedwards Added HHPRED Evidence Accession: 2LFP_A Description: Bacteriophage SPP1 complete nucleotide sequence; VIRAL PROTEIN; NMR {Bacillus phage SPP1} Query Range: (1-88) Target Range: (5-97) at 2019-04-05 23:17:53.0
aballard changed the coding capacity to yes at 2019-02-05 09:52:15.0
aballard changed starterator analysis to SS at 2019-02-05 09:52:15.0
aballard changed note to HHPred results concluded this is a possible portal protein. Hit (5A21_G). at 2019-01-26 02:54:34.0
aballard changed synteny to Although there was a match on HHPRED, there can only be one portal protein, which is located at gene 3. That leaves this as a hypothetical protein of currently unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and Colacorta. Gene is located after four other hypothetical proteins and followed by one more. at 2019-01-26 02:54:34.0
dcedwards changed the gene function to NKF at 2019-01-22 15:00:19.0
dcedwards changed synteny to Although there was a match on HHPRED, there can only be one portal protein, which is located at gene 3 at 2019-01-22 15:00:19.0
aballard changed the gene function to Portal protein at 2019-01-18 10:24:10.0
aballard changed synteny to This gene is located in the initial section, this is logical as it is a structural component. This portal protein was located near a minor capsid protein. at 2019-01-18 10:24:10.0
aballard changed the gene function to portal protein at 2019-01-18 10:21:13.0
aballard changed note to HHPred results concluded this is a possible portal protein. Hit (5A21_G) at 2019-01-18 10:21:13.0
aballard Added NCBI BLAST Evidence Accession: AUX83349 Query Range: (1-122) Target Range: (1-122) at 2019-01-18 10:17:33.0
aballard Added TmHmm evidence at 2019-01-18 10:17:33.0

Gene Number: 12
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-05 23:19:59.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70565 Query Range: (1-86) Target Range: (1-86) at 2019-04-05 23:19:59.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48584 Query Range: (1-86) Target Range: (1-86) at 2019-04-05 23:19:59.0
dcedwards Added HHPRED Evidence Accession: PF18614.1 Description: RNase_II_C_S1 ; RNase II-type exonuclease C-terminal S1 domain Query Range: (3-41) Target Range: (4-41) at 2019-04-05 23:19:59.0
aballard changed the coding capacity to yes at 2019-02-05 09:53:09.0
aballard changed starterator analysis to SS at 2019-02-05 09:53:09.0
michaelaa24 changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and ColaCorta. Gene is the sixth gene located after a series of five other hypothetical proteins.
This gene is also followed by a major tail protien. at 2019-01-27 13:08:56.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and ColaCorta. Gene is the sixth gene located after a series of five other hypothetical proteins. at 2019-01-26 02:56:45.0
dcedwards changed the gene function to NKF at 2019-01-22 15:10:28.0
aballard Added NCBI BLAST Evidence Accession: AXH48584 Query Range: (1-86) Target Range: (1-86) at 2019-01-18 10:35:24.0
aballard changed synteny to Hypothetical protein of currently unknown function, similar to the hypothetical proteins found in Sansa, Eleri, and ColaCorta. Gene is located near at 2019-01-18 10:35:24.0
aballard changed note to Predicted hypothetical protein with a currently unknown function. at 2019-01-18 10:31:44.0
aballard changed the gene function to Hypothetical Protien at 2019-01-18 10:31:02.0
aballard Added NCBI BLAST Evidence Accession: AUX83350 Query Range: (1-86) Target Range: (1-86) at 2019-01-18 10:29:46.0
aballard Added NCBI BLAST Evidence Accession: AXH70565 Query Range: (1-86) Target Range: (1-86) at 2019-01-18 10:29:46.0

Gene Number: 13
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: major tail protein at 2019-04-05 23:20:46.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48585 Query Range: (1-164) Target Range: (1-164) at 2019-04-05 23:20:46.0
dcedwards Added HHPRED Evidence Accession: 2K4Q_A Description: Major tail protein V; gpV, Bacteriophage Lambda, Major tail; NMR {Enterobacteria phage lambda} Query Range: (7-154) Target Range: (7-148) at 2019-04-05 23:20:46.0
dcedwards Added HHPRED Evidence Accession: PF06199.11 Description: Phage_tail_2 ; Phage tail tube protein Query Range: (44-153) Target Range: (22-124) at 2019-04-05 23:20:46.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:29:25.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:29:25.0
stacyluka changed note to Other members of the EA2 subcluster have cited the function of this gene as a major tail protein. at 2019-01-29 04:20:03.0
stacyluka changed note to Other members of the EA2 subcluster have not cited a known function for this gene. at 2019-01-29 04:19:23.0
michaelaa24 changed synteny to Followed by tail assembly chaperone
Follows 6 hypothetical protiens, and is followed by 2 tail assembly protiens. at 2019-01-27 11:12:53.0
bristerpostma Removed HHPRED Evidence Accession: PF16460.4 Description: Phage_TTP_11 ; Phage tail tube, TTP, lambda-like Query Range: (46-153) Target Range: (1-122) at 2019-01-19 06:40:07.0
bristerpostma Added HHPRED Evidence Accession: PF16460.4 Description: Phage_TTP_11 ; Phage tail tube, TTP, lambda-like Query Range: (46-153) Target Range: (1-122) at 2019-01-19 06:37:56.0
bristerpostma changed the gene function to major tail protein at 2019-01-19 06:37:56.0
bristerpostma changed synteny to Followed by tail assembly chaperone at 2019-01-19 06:37:56.0
bristerpostma Added Phages DB Evidence Phage Name: Sansa Function: major tail protein at 2019-01-19 06:29:51.0
bristerpostma Added Phages DB Evidence Phage Name: Eleri Function: major tail protein at 2019-01-19 06:29:51.0
bristerpostma Added NCBI BLAST Evidence Accession: AUX83351 Query Range: (1-164) Target Range: (1-164) at 2019-01-19 06:29:51.0
bristerpostma Added NCBI BLAST Evidence Accession: AXH48585 Query Range: (1-164) Target Range: (1-164) at 2019-01-19 06:29:51.0
bristerpostma changed the gene function to tail assembly chaperone at 2019-01-19 06:29:51.0

Gene Number: 14
dcedwards changed synteny to Bacteria Eleri and Sansa have this gene located in a similar position and called function of tail assembly chaperone. But HHpred presented a 66.85 probability of this having a function that is unknown.
Followed by tail assembly chaperone
Follows a major tail protein.
SEA-PHAGES notes indicate that there is no known frameshift for the tail assembly chaperone proteins for cluster EA2. at 2019-04-05 23:26:23.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: tail assembly chaperone at 2019-04-05 23:25:19.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48586 Query Range: (1-186) Target Range: (1-186) at 2019-04-05 23:25:19.0
dcedwards changed note to SEA-PHAGES notes indicate that there is no known frameshift for the tail assembly chaperone proteins for cluster EA2. at 2019-04-05 23:25:19.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:30:05.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:30:05.0
faith changed synteny to Bacteria Eleri and Sansa have this protien located in a similar position. But HHpred presented a 66.85 probablity of this having a function that is unknown.
Followed by tail assembly chaperone
Follows a major tail protien. at 2019-01-27 15:17:28.0
michaelaa24 changed synteny to Bacteria Eleri and Sansa have this protien located in a similar position. But HHpred presented a 66.85 probablity of this having a function that is unknown.
Followed by tail assembly chaperone
Follows a major tail protien. at 2019-01-27 13:19:56.0
michaelaa24 changed synteny to Followed by tail assembly chaperone
Follows a major tail protien. at 2019-01-27 13:10:51.0
bristerpostma Added Phages DB Evidence Phage Name: Eleri Function: tail assembly chaperone at 2019-01-19 06:16:01.0
bristerpostma Added Phages DB Evidence Phage Name: Sansa Function: tail assembly chaperone at 2019-01-19 06:16:01.0
bristerpostma Added NCBI BLAST Evidence Accession: AUX83352 Query Range: (1-186) Target Range: (1-186) at 2019-01-19 06:16:01.0
bristerpostma Added NCBI BLAST Evidence Accession: AXH48586 Query Range: (1-186) Target Range: (1-186) at 2019-01-19 06:16:01.0
bristerpostma changed the gene function to tail assembly chaperone at 2019-01-19 06:16:01.0
bristerpostma changed note to Possible programmed translational frameshift mutation at 2019-01-19 06:16:01.0
bristerpostma changed synteny to Followed by tail assembly chaperone at 2019-01-19 06:16:01.0

Gene Number: 15
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: tail assembly chaperone at 2019-04-05 23:27:03.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48587 Query Range: (1-51) Target Range: (1-51) at 2019-04-05 23:27:03.0
dcedwards changed note to SEA-PHAGES notes indicate that there is no known frameshift for the tail assembly chaperone proteins for cluster EA2. at 2019-04-05 23:27:03.0
dcedwards changed synteny to Eleri, Sansa, and Pajaza have a tail assembly protein as well.
HHpred has a low probability of this being a tail assembly chaperone.
Followed by tape measure protein
Follows a tail assembly protein
SEA-PHAGES notes indicate that there is no known frameshift for the tail assembly chaperone proteins for cluster EA2. at 2019-04-05 23:27:03.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:31:07.0
michaelaa24 changed synteny to Eleri, Sansa, and Pajaza have a tail assembly protien as well.
HHpred has a low probability of this being a tail assembly chaperone.
Followed by tape measure protein
Follows a tail assembly protien at 2019-01-27 13:22:04.0
bristerpostma changed note to Possible programmed traslational frame-shift mutation at 2019-01-19 05:55:22.0
bristerpostma changed note to Possible frame shift mutation at 2019-01-19 05:49:55.0
bristerpostma Added Phages DB Evidence Phage Name: Eleri Function: tail assembly chaperone at 2019-01-19 05:41:09.0
bristerpostma Added Phages DB Evidence Phage Name: Sansa Function: tail assembly chaperone at 2019-01-19 05:41:09.0
bristerpostma Added Phages DB Evidence Phage Name: Pajaza Function: tail assembly chaperone at 2019-01-19 05:41:09.0
bristerpostma Added NCBI BLAST Evidence Accession: AUX83353 Query Range: (1-51) Target Range: (75-125) at 2019-01-19 05:41:09.0
bristerpostma Added NCBI BLAST Evidence Accession: AXH48587 Query Range: (1-51) Target Range: (1-51) at 2019-01-19 05:41:09.0
bristerpostma changed the gene function to tail assembly chaperone at 2019-01-19 05:41:09.0
bristerpostma changed the coding capacity to yes at 2019-01-19 05:41:09.0
bristerpostma changed synteny to Followed by tape measure protein at 2019-01-19 05:41:09.0

Gene Number: 16
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: tape measure protein at 2019-04-05 23:27:43.0
dcedwards Added CDD Evidence Accession: COG5412 Query Range: (145-721) Target Range: (1-559) at 2019-04-05 23:27:43.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48588 Query Range: (1-802) Target Range: (1-802) at 2019-04-05 23:27:43.0
dcedwards Added HHPRED Evidence Accession: PF06791.13 Description: TMP_2 ; Prophage tail length tape measure protein Query Range: (18-193) Target Range: (38-202) at 2019-04-05 23:27:43.0
dcedwards Added TmHmm evidence at 2019-04-05 23:27:43.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:31:23.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:31:23.0
michaelaa24 changed synteny to Longest gene in the genome, only one present, is a structural protein, and followed by minor tail proteins. Is preceded by two tail assembly chaperones. Bacteria Andromedas, ColaCorta, Eleri, and Sansa have a similar gene in the same relative location. HHpred presented a 80..3 probabilty of this being the tape measure protien. at 2019-01-27 13:25:52.0
aballard changed synteny to Longest gene in the genome, only one present, is a structural protein, and followed by minor tail proteins. Is preceded by two tail assembly chaperones. at 2019-01-26 02:58:06.0
tiffanymlee changed synteny to Longest gene in genome, only one present, is a structural protein, and followed by minor tail proteins. Is preceded by tail assembly chaperones. at 2019-01-24 13:44:51.0
bristerpostma changed synteny to longest gene in genome, only one present, is a structural protein, and followed by minor tail proteins. at 2019-01-23 05:19:09.0
dcedwards changed the gene function to tape measure protein at 2019-01-18 08:58:54.0
dcedwards changed note to longest gene in genome at 2019-01-18 08:58:54.0
dcedwards changed synteny to longest gene in genome, only one present, is a structural protein, and at 2019-01-18 08:58:54.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83354 Query Range: (1-802) Target Range: (1-802) at 2019-01-18 08:55:41.0
dcedwards Added NCBI BLAST Evidence Accession: AXH48588 Query Range: (1-802) Target Range: (1-802) at 2019-01-18 08:55:41.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: tape measure protein at 2019-01-18 08:53:25.0
dcedwards Added Phages DB Evidence Phage Name: ColaCorta Function: tape measure protein at 2019-01-18 08:53:25.0
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: tape measure protein at 2019-01-18 08:53:25.0
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: tape measure protein at 2019-01-18 08:53:25.0

Gene Number: 17
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: minor tail protein at 2019-04-05 23:28:26.0
dcedwards Added CDD Evidence Accession: pfam05709 Query Range: (21-217) Target Range: (7-218) at 2019-04-05 23:28:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83355 Query Range: (1-257) Target Range: (1-257) at 2019-04-05 23:28:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70570 Query Range: (1-257) Target Range: (1-257) at 2019-04-05 23:28:26.0
dcedwards Added HHPRED Evidence Accession: 2X8K_C Description: HYPOTHETICAL PROTEIN 19.1; VIRAL PROTEIN, DISTAL TAIL PROTEIN; 2.95A {BACILLUS PHAGE SPP1} Query Range: (1-255) Target Range: (10-252) at 2019-04-05 23:28:26.0
dcedwards changed note to A minor tail protein according to BLASTp. Also listed as a hypothetical distal tail protein on HHpred, which is the same thing as a minor tail protein. at 2019-04-05 23:28:26.0
faith changed the coding capacity to yes at 2019-02-06 09:05:53.0
faith changed starterator analysis to SS at 2019-02-06 09:05:53.0
michaelaa24 changed synteny to Other phages in the EA2 subgroup, which are closely related, also have a minor tail protein in this location (Andromedas, ColaCorta, Eleri, Sansa).
This gene follows a tape measure protien and is followed by a minor tail protien. at 2019-01-27 13:27:03.0
david changed synteny to Other phages in the EA2 subgroup, which are closely related, also have a minor tail protein in this location (Andromedas, ColaCorta, Eleri, Sansa). at 2019-01-27 11:02:37.0
faith Added Phages DB Evidence Phage Name: Sansa Function: minor tail protein at 2019-01-19 08:14:45.0
faith Added Phages DB Evidence Phage Name: Eleri Function: minor tail protein at 2019-01-19 08:14:45.0
faith Added Phages DB Evidence Phage Name: ColaCorta Function: minor tail protein at 2019-01-19 08:14:45.0
faith Added NCBI BLAST Evidence Accession: AXH48589 Query Range: (1-257) Target Range: (1-257) at 2019-01-19 08:14:45.0
faith Added NCBI BLAST Evidence Accession: AXH70570 Query Range: (1-257) Target Range: (1-257) at 2019-01-19 08:14:45.0
faith Added NCBI BLAST Evidence Accession: AUX83355 Query Range: (1-257) Target Range: (1-257) at 2019-01-19 08:14:45.0
faith changed the gene function to minor tail protein at 2019-01-19 08:14:45.0
faith changed note to A minor tail protein according to Blastp. Also listed as a hypothetical distal tail protein on HHpred, which is the same thing as a minor tail protein. at 2019-01-19 08:14:45.0

Gene Number: 18
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: minor tail protein at 2019-04-05 23:29:46.0
dcedwards Added CDD Evidence Accession: pfam06605 Query Range: (406-696) Target Range: (4-298) at 2019-04-05 23:29:46.0
dcedwards Added CDD Evidence Accession: TIGR01665 Query Range: (396-679) Target Range: (4-308) at 2019-04-05 23:29:46.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70571 Query Range: (1-808) Target Range: (1-808) at 2019-04-05 23:29:46.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83356 Query Range: (1-808) Target Range: (1-808) at 2019-04-05 23:29:46.0
dcedwards Added HHPRED Evidence Accession: 3GS9_A Description: Protein gp18; NP_465809.1, prophage tail protein gp18; 1.7A {Listeria monocytogenes EGD-e} Query Range: (379-700) Target Range: (10-333) at 2019-04-05 23:29:46.0
dcedwards Added HHPRED Evidence Accession: PF06605.11 Description: Prophage_tail ; Prophage endopeptidase tail Query Range: (403-700) Target Range: (1-331) at 2019-04-05 23:29:46.0
faith changed the coding capacity to yes at 2019-02-06 09:06:46.0
faith changed starterator analysis to SS at 2019-02-06 09:06:46.0
faith changed synteny to Other phages in the EA2 subgroup, which are closely related, also have a minor tail protein in this location (Andromedas, ColaCorta, Eleri, Sansa). at 2019-01-27 14:53:30.0
michaelaa24 changed synteny to Other phages in the EA2 subgroup, which are closely related, also have a minor tail protein in this location (Andromedas, ColaCorta, Eleri, Sansa). HHpred predicted this to be a tail protien with a probabiltiy of 99.94. at 2019-01-27 13:29:51.0
david changed synteny to Other phages in the EA2 subgroup, which are closely related, also have a minor tail protein in this location (Andromedas, ColaCorta, Eleri, Sansa). at 2019-01-27 11:03:06.0
faith Added NCBI BLAST Evidence Accession: AXH48590 Query Range: (1-808) Target Range: (1-808) at 2019-01-19 08:53:47.0
faith Added NCBI BLAST Evidence Accession: AXH70571 Query Range: (1-808) Target Range: (1-808) at 2019-01-19 08:53:47.0
faith Added NCBI BLAST Evidence Accession: AUX83356 Query Range: (1-808) Target Range: (1-808) at 2019-01-19 08:53:47.0
faith Added HHPRED Evidence Accession: 3GS9_A Description: Protein gp18; NP_465809.1, prophage tail protein gp18; 1.7A {Listeria monocytogenes EGD-e} Query Range: (383-702) Target Range: (14-335) at 2019-01-19 08:53:47.0
faith Added HHPRED Evidence Accession: PF06605.10 Description: Prophage_tail ; Prophage endopeptidase tail Query Range: (403-700) Target Range: (1-325) at 2019-01-19 08:53:47.0
faith changed the gene function to minor tail protein at 2019-01-19 08:53:47.0
faith changed note to Most similar to a gp18 prophage tail protein, but that is not an official name or function, nor is this a virus with a contractile tail. at 2019-01-19 08:53:47.0

Gene Number: 19
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-04-05 23:30:32.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83357 Query Range: (1-62) Target Range: (1-62) at 2019-04-05 23:30:32.0
dcedwards Added HHPRED Evidence Accession: PF07902.11 Description: Gp58 ; gp58-like protein Query Range: (19-51) Target Range: (33-64) at 2019-04-05 23:30:32.0
faith changed the coding capacity to yes at 2019-02-06 09:07:32.0
faith changed starterator analysis to SS at 2019-02-06 09:07:32.0
faith Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-27 14:46:03.0
faith Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-27 14:46:03.0
faith Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-27 14:46:03.0
faith Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-27 14:46:03.0
faith Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-27 14:46:03.0
faith Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-27 14:46:03.0
faith changed synteny to Gene 19 follows a minor tail protein in similar phages (Andromedas Eleria, and ColaCorta) and is of unknown function in those like it is in Finny. at 2019-01-27 14:46:03.0
dcedwards changed the gene function to NKF at 2019-01-22 15:19:10.0
faith Added NCBI BLAST Evidence Accession: AXH48591 Query Range: (1-62) Target Range: (1-62) at 2019-01-19 09:03:59.0
faith Added NCBI BLAST Evidence Accession: AUX83357 Query Range: (1-62) Target Range: (1-62) at 2019-01-19 09:03:59.0
faith changed the gene function to hypothetical protein at 2019-01-19 09:03:59.0
faith changed note to Hypothetical protein of unknown function according to Blastp. at 2019-01-19 09:03:59.0

Gene Number: 20
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:31:06.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48592 Query Range: (1-198) Target Range: (1-198) at 2019-04-05 23:31:06.0
dcedwards Added HHPRED Evidence Accession: PF13799.6 Description: DUF4183 ; Domain of unknown function (DUF4183) Query Range: (62-70) Target Range: (35-43) at 2019-04-05 23:31:06.0
dcedwards changed note to Hypothetical protein according to BLASTp. at 2019-04-05 23:31:06.0
faith changed the coding capacity to yes at 2019-02-06 09:08:30.0
faith changed starterator analysis to SS at 2019-02-06 09:08:30.0
faith changed synteny to Gene 20 comes after gene 19, whose function is unknown in Finny and phages of the same subcluster, and before gene 21 which is also unknown in Finny and phages of the same subcluster. at 2019-01-27 14:47:28.0
dcedwards changed the gene function to NKF at 2019-01-22 15:19:29.0
faith Added NCBI BLAST Evidence Accession: AUX83358 Query Range: (1-198) Target Range: (1-198) at 2019-01-19 09:07:44.0
faith Added NCBI BLAST Evidence Accession: AXH48592 Query Range: (1-198) Target Range: (1-198) at 2019-01-19 09:07:44.0
faith changed the gene function to hypothetical protein at 2019-01-19 09:07:44.0
faith changed note to Hypothetical protein according to Blastp. at 2019-01-19 09:07:44.0

Gene Number: 21
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:31:28.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83359 Query Range: (1-158) Target Range: (2-159) at 2019-04-05 23:31:28.0
dcedwards Added HHPRED Evidence Accession: 2F0C_A Description: Phage tp901-1 ORF49 (BPP); Beta-barrel, beta prism, 3 helix; HET: GOL; 1.65A {Lactococcus phage TP901-1} SCOP: b.108.1.4, b.21.1.3 Query Range: (16-150) Target Range: (36-190) at 2019-04-05 23:31:28.0
faith changed starterator analysis to SS at 2019-02-06 09:09:08.0
leahdowell changed the coding capacity to yes at 2019-02-05 09:40:30.0
faith changed synteny to Gene 21 comes after gene 20, whose function is unknown in Finny and phages of the same subcluster. Gene 21’s function is unknown in phages of the same subcluster. at 2019-01-27 14:52:48.0
dcedwards changed the gene function to NKF at 2019-01-22 15:19:48.0
leahdowell Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 07:55:13.0
leahdowell Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 07:55:13.0
leahdowell Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 07:55:13.0
leahdowell Added NCBI BLAST Evidence Accession: AXH48593 Query Range: (1-158) Target Range: (1-158) at 2019-01-19 07:55:13.0
leahdowell Added NCBI BLAST Evidence Accession: AUX83359 Query Range: (1-158) Target Range: (2-159) at 2019-01-19 07:55:13.0
leahdowell changed the gene function to Unknown at 2019-01-19 07:55:13.0
leahdowell changed note to hypothetical protein at 2019-01-19 07:55:13.0
leahdowell changed the start site to 15822 at 2019-01-19 07:28:49.0

Gene Number: 22
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: minor tail protein at 2019-04-05 23:34:21.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83360 Query Range: (1-695) Target Range: (19-713) at 2019-04-05 23:34:21.0
dcedwards Added HHPRED Evidence Accession: 4TXG_A Description: Family 18 Glycoside Hydrolase (E.C.3.2.1.14); Chitinase Family GH18 Chitinase, HYDROLASE; HET: CS; 1.75A {Chromobacterium violaceum} Query Range: (7-287) Target Range: (181-610) at 2019-04-05 23:34:21.0
faith changed starterator analysis to SS at 2019-02-06 09:10:07.0
leahdowell changed the coding capacity to yes at 2019-02-05 09:40:40.0
faith changed synteny to Very closely related bacteriophages have this gene in the area. Phages Eleri, ColaCorta, and Andromedas also have gene 22 in the same location and with the same function. It comes before lysin A in Finny and phages of the same subcluster. at 2019-01-27 14:54:41.0
leahdowell Added Phages DB Evidence Phage Name: Sansa Function: minor tail protein at 2019-01-19 07:53:36.0
leahdowell Added Phages DB Evidence Phage Name: ColaCorta Function: minor tail protein at 2019-01-19 07:53:36.0
leahdowell Added Phages DB Evidence Phage Name: Eleri Function: minor tail protein at 2019-01-19 07:53:36.0
leahdowell Added NCBI BLAST Evidence Accession: AXH48594 Query Range: (1-695) Target Range: (1-695) at 2019-01-19 07:53:36.0
leahdowell Added NCBI BLAST Evidence Accession: AUX83360 Query Range: (1-695) Target Range: (19-713) at 2019-01-19 07:53:36.0
leahdowell changed the gene function to minor tail protein at 2019-01-19 07:53:36.0
leahdowell changed synteny to Very closely related bacteriophages have this gene in the area. at 2019-01-19 07:53:36.0

Gene Number: 23
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: lysin A at 2019-04-05 23:42:04.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48595 Query Range: (1-260) Target Range: (1-260) at 2019-04-05 23:42:04.0
dcedwards Added HHPRED Evidence Accession: 3BKH_A Description: lytic transglycosylase; transglycosylase, bacteriophage, phiKZ, endolysin, peptidoglycan; 2.5A {Pseudomonas phage phiKZ} Query Range: (113-258) Target Range: (12-151) at 2019-04-05 23:42:04.0
faith changed starterator analysis to SS at 2019-02-06 09:11:28.0
leahdowell changed the coding capacity to yes at 2019-02-05 09:40:50.0
faith changed synteny to Very closely related bacteriophages have this gene in the area. Follows a minor tail protein and comes before a membrane protein in phages of the same subcluster. at 2019-01-27 14:59:58.0
tiffanymlee changed synteny to Very closely related bacteriophages have this gene in the area. Follows a minor tail protein and comes before a membrane protein. at 2019-01-24 13:42:33.0
leahdowell Added Phages DB Evidence Phage Name: ColaCorta Function: lysin A at 2019-01-19 07:51:22.0
leahdowell Added Phages DB Evidence Phage Name: Eleri Function: lysin A at 2019-01-19 07:51:22.0
leahdowell Added Phages DB Evidence Phage Name: Sansa Function: lysin A at 2019-01-19 07:51:22.0
leahdowell Added NCBI BLAST Evidence Accession: AUX83361 Query Range: (1-260) Target Range: (1-260) at 2019-01-19 07:51:22.0
leahdowell Added NCBI BLAST Evidence Accession: AXH48595 Query Range: (1-260) Target Range: (1-260) at 2019-01-19 07:51:22.0
leahdowell Added HHPRED Evidence Accession: 4OX3_A Description: LdcB (YodJ); LAS family, LD-carboxypeptidase, Cell wall; 2.0A {Bacillus subtilis} Query Range: (7-115) Target Range: (62-195) at 2019-01-19 07:51:22.0
leahdowell changed the gene function to lysin A at 2019-01-19 07:51:22.0
leahdowell changed synteny to Very closely related bacteriophages have this gene in the area. at 2019-01-19 07:51:22.0

Gene Number: 24
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: membrane protein at 2019-04-05 23:47:40.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48596 Query Range: (1-127) Target Range: (1-127) at 2019-04-05 23:47:40.0
dcedwards Added HHPRED Evidence Accession: PF10874.8 Description: DUF2746 ; Protein of unknown function (DUF2746) Query Range: (8-107) Target Range: (9-100) at 2019-04-05 23:47:40.0
dcedwards Added HHPRED Evidence Accession: 6D42_B Description: Intermediate conductance calcium-activated potassium channel; Four-helix bundle, copper, MEMBRANE PROTEIN; HET: MSE; 1.75013644453A {Homo sapiens} Query Range: (74-98) Target Range: (4-28) at 2019-04-05 23:47:40.0
faith changed starterator analysis to SS at 2019-02-06 09:13:47.0
leahdowell changed the coding capacity to yes at 2019-02-05 09:40:58.0
faith changed note to Possible to list as lipoprotein or membrane protein according to HHPred. at 2019-01-27 15:02:53.0
faith changed synteny to Gene 24 follows a Lysin A in Finny and other closely related phages (ColaCorta, Eleri, and Andromedas) and comes before a holin gene in Finny and closely related phages. at 2019-01-27 15:02:53.0
dcedwards changed the gene function to membrane protein at 2019-01-23 04:00:00.0
dcedwards changed the gene function to lipoprotein at 2019-01-22 15:29:53.0
dcedwards changed note to Possible to list as lipoprotein or membrane protein at 2019-01-22 15:29:53.0
leahdowell changed the gene function to membrane protein at 2019-01-19 07:49:55.0
leahdowell changed note to possibly part of the outer membrane at 2019-01-19 07:49:55.0
leahdowell changed synteny to Very closely related bacteriophages have this gene in the area. at 2019-01-19 07:49:55.0
leahdowell Added Phages DB Evidence Phage Name: Andromedas Function: membrane protein at 2019-01-19 07:45:32.0
leahdowell Added Phages DB Evidence Phage Name: ColaCorta Function: membrane protein at 2019-01-19 07:45:32.0
leahdowell Added Phages DB Evidence Phage Name: Eleri Function: membrane protein at 2019-01-19 07:45:32.0
leahdowell Added NCBI BLAST Evidence Accession: AUX83362 Query Range: (1-127) Target Range: (1-127) at 2019-01-19 07:45:32.0
leahdowell Added NCBI BLAST Evidence Accession: AXH48596 Query Range: (1-127) Target Range: (1-127) at 2019-01-19 07:45:32.0
leahdowell Added HHPRED Evidence Accession: 1EQ7_A Description: CORE STRUCTURE OF THE OUTER; lipoprotein, outer membrane, protein folding; 1.9A {Escherichia coli} SCOP: h.1.16.1 Query Range: (58-96) Target Range: (13-51) at 2019-01-19 07:45:32.0
leahdowell Added HHPRED Evidence Accession: 1JCD_B Description: MAJOR OUTER MEMBRANE LIPOPROTEIN; LIPOPROTEIN, PROTEIN FOLDING, HELIX CAPPING; 1.3A {Escherichia coli} SCOP: h.1.16.1 Query Range: (58-96) Target Range: (13-51) at 2019-01-19 07:45:32.0

Gene Number: 25
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: holin at 2019-04-05 23:49:54.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83363 Query Range: (1-74) Target Range: (17-90) at 2019-04-05 23:49:54.0
dcedwards Added HHPRED Evidence Accession: PF06946.10 Description: Phage_holin_5_1 ; Bacteriophage A118-like holin, Hol118 Query Range: (1-72) Target Range: (22-93) at 2019-04-05 23:49:54.0
dcedwards changed starterator analysis to SS at 2019-04-05 23:49:29.0
dcedwards changed the start site to 19701 at 2019-04-05 23:48:45.0
david changed the coding capacity to yes at 2019-02-06 09:15:50.0
faith changed synteny to Closely related bacteriophages have this gene in the same location. Follows a membrane protein in Finny and other closely related phages (ColaCorta, Eleri, and Andromedas) at 2019-01-27 15:04:29.0
faith changed synteny to Closely related bacteriophages have this gene in the same location. Follows a membrane protein and is before another membrane protein in Finny and other closely related phages (ColaCorta, Eleri, and Andromedas) at 2019-01-27 15:04:02.0
tiffanymlee changed synteny to Closely related bacteriophages have this gene in the same location. Follows a membrane protein. at 2019-01-24 13:40:34.0
tiffanymlee changed synteny to Awaiting annotation on neighboring genes. Closely related bacteriophages have this gene in the same location. Follows a membrane protein. at 2019-01-24 13:40:20.0
dcedwards changed gene to included.
david changed gene to not included.
david changed the gene function to holin at 2019-01-18 09:38:56.0
david changed synteny to Awaiting annotation on neighboring genes. at 2019-01-18 09:37:25.0
david changed the gene function to holin protein at 2019-01-18 09:36:00.0
david changed note to Holins are small proteins that trigger and control the degradation of the hosts cell wall. Is typically made by bacteriophages and is used to break down the cell wall of a prokaryotic host. at 2019-01-18 09:36:00.0
david Added NCBI BLAST Evidence Accession: AXH48597 Query Range: (1-90) Target Range: (1-90) at 2019-01-18 09:26:49.0
david Added Phages DB Evidence Phage Name: Eleri Function: holin at 2019-01-18 09:26:04.0
david Added Phages DB Evidence Phage Name: ColaCorta Function: holin at 2019-01-18 09:26:04.0
david Added Phages DB Evidence Phage Name: Andromedas Function: holin at 2019-01-18 09:26:04.0
david Added HHPRED Evidence Accession: PF06946.10 Description: Phage_holin_5_1 ; Bacteriophage A118-like holin, Hol118 Query Range: (1-88) Target Range: (4-93) at 2019-01-18 09:26:04.0
david Added NCBI BLAST Evidence Accession: AUX83363 Query Range: (1-90) Target Range: (1-90) at 2019-01-18 09:24:49.0
david changed the start site to 19653 at 2019-01-18 09:23:07.0

Gene Number: 26
dcedwards changed starterator analysis to SS at 2019-04-05 23:51:42.0
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:51:36.0
dcedwards Added HHPRED Evidence Accession: PF09912.9 Description: DUF2141 ; Uncharacterized protein conserved in bacteria (DUF2141) Query Range: (94-129) Target Range: (45-78) at 2019-04-05 23:51:36.0
david changed the coding capacity to yes at 2019-02-06 09:16:58.0
faith changed synteny to Gene 26 follows a holin gene in Finny and phages of the same subcluster. at 2019-01-27 15:07:12.0
dcedwards changed the gene function to NKF at 2019-01-22 15:48:17.0
david changed the gene function to Unknown at 2019-01-18 10:10:43.0
david changed note to Hypothetical Protein (unknown). at 2019-01-18 09:54:33.0
david Added NCBI BLAST Evidence Accession: AUX83364 Query Range: (1-139) Target Range: (1-139) at 2019-01-18 09:53:17.0
david Added TmHmm evidence at 2019-01-18 09:53:17.0
david Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 09:48:25.0
david Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 09:48:25.0
david Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 09:48:25.0
david Added Phages DB Evidence Phage Name: Sansa Function: membrane protein at 2019-01-18 09:48:25.0

Gene Number: 27
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:53:17.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48599 Query Range: (2-57) Target Range: (3-58) at 2019-04-05 23:53:17.0
dcedwards Added HHPRED Evidence Accession: 6BS8_A Description: Replicative DNA helicase (E.C.3.6.4.12); class 3 intein, DnaB, HYDROLASE; 1.95A {Mycobacterium smegmatis} Query Range: (5-31) Target Range: (15-41) at 2019-04-05 23:53:17.0
dcedwards changed starterator analysis to SS at 2019-04-05 23:52:44.0
david changed the coding capacity to yes at 2019-02-06 09:19:01.0
stacyluka changed synteny to Gene 27 is unknown in the other phages within the EA2 subcluster.

This gene is between genes of unknown function.

This reverse gene comes after a forward gene and is followed by more reverse genes. at 2019-01-29 04:18:42.0
faith changed synteny to Gene 27 is unknown in phages of the same subcluster and is before and after hypothetical proteins. at 2019-01-27 15:08:15.0
dcedwards changed the gene function to NKF at 2019-01-22 15:48:30.0
david changed the gene function to Unknown at 2019-01-18 10:10:55.0
david Added NCBI BLAST Evidence Accession: AUX83365 Query Range: (2-57) Target Range: (3-58) at 2019-01-18 09:59:57.0
david Added NCBI BLAST Evidence Accession: AXH48599 Query Range: (2-57) Target Range: (3-58) at 2019-01-18 09:59:57.0
david Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 09:59:12.0
david Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 09:59:12.0
david Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 09:59:12.0
david Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-18 09:59:12.0
david changed note to Hypothetical Protein (unknown). at 2019-01-18 09:59:12.0
david Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 09:56:04.0
david Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 09:56:04.0
david Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 09:56:04.0
david Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-18 09:56:04.0

Gene Number: 28
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:56:25.0
dcedwards Added HHPRED Evidence Accession: 5VZL_C Description: CRISPR-associated endonuclease Cas9, phage anti-CRISPR; anti-CRISPR, Cas9, CRISPR, gene editing; HET: GTP;{Streptococcus pyogenes M1 GAS} Query Range: (3-39) Target Range: (30-67) at 2019-04-05 23:56:25.0
dcedwards changed synteny to Possible Cas9 !!! at 2019-04-05 23:56:25.0
dcedwards changed starterator analysis to SS at 2019-04-05 23:54:14.0
david changed the coding capacity to yes at 2019-02-06 09:21:31.0
dcedwards changed the gene function to NKF at 2019-01-22 15:48:43.0
david changed the gene function to Unkown at 2019-01-18 10:11:03.0
david changed note to Hypothetical protein (unknown). at 2019-01-18 10:07:23.0
david Added NCBI BLAST Evidence Accession: AUX83366 Query Range: (1-50) Target Range: (1-50) at 2019-01-18 10:04:50.0
david Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 10:03:46.0
david Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 10:03:46.0
david Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 10:03:46.0
david Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-18 10:03:46.0

Gene Number: 29
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-05 23:59:45.0
dcedwards Added HHPRED Evidence Accession: PF18373.1 Description: Spectrin_like ; Spectrin like domain Query Range: (2-21) Target Range: (15-34) at 2019-04-05 23:59:45.0
faith changed starterator analysis to SS at 2019-02-06 09:16:24.0
tiffanymlee changed synteny to Gene 29 is unknown in the other phages within the EA2 subcluster and is surrounded by genes of unknown function. at 2019-02-05 11:25:42.0
leahdowell changed note to Hypothetical Protein (function unknown) at 2019-01-27 12:55:53.0
dcedwards changed the gene function to NKF at 2019-01-22 15:50:36.0
tiffanymlee changed the gene function to unknown at 2019-01-18 10:18:41.0
tiffanymlee Added NCBI BLAST Evidence Accession: AUX83367 Query Range: (1-51) Target Range: (1-51) at 2019-01-18 09:41:59.0
tiffanymlee changed the gene function to at 2019-01-18 09:41:59.0
tiffanymlee changed synteny to at 2019-01-18 09:41:59.0
tiffanymlee Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 09:31:37.0
tiffanymlee Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 09:31:37.0
tiffanymlee Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 09:31:37.0
tiffanymlee Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-18 09:31:37.0
tiffanymlee changed the gene function to function unknown at 2019-01-18 09:31:37.0
tiffanymlee changed note to function unknown at 2019-01-18 09:31:37.0
tiffanymlee changed the coding capacity to yes at 2019-01-18 09:31:37.0
tiffanymlee changed synteny to function unknown at 2019-01-18 09:31:37.0
tiffanymlee changed the start site to 20982 at 2019-01-18 09:17:15.0

Gene Number: 30
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:02:05.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83368 Query Range: (1-302) Target Range: (7-289) at 2019-04-06 00:02:05.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70583 Query Range: (1-302) Target Range: (7-289) at 2019-04-06 00:02:05.0
dcedwards Added HHPRED Evidence Accession: 4MO1_A Description: Antitermination protein Q; Structural Genomics, PSI-Biology, Protein Structure; 2.099A {Enterobacteria phage lambda} Query Range: (31-169) Target Range: (80-170) at 2019-04-06 00:02:05.0
faith changed starterator analysis to SS at 2019-02-06 09:17:00.0
tiffanymlee changed synteny to Gene 30 is unknown in the other phages within the EA2 subcluster and is surrounded by genes of unknown function. at 2019-02-05 11:25:53.0
leahdowell changed note to Hypothetical Protein (function unknown) at 2019-01-27 12:57:00.0
dcedwards changed the gene function to NKF at 2019-01-22 15:50:48.0
tiffanymlee changed the gene function to unknown at 2019-01-18 10:18:51.0
tiffanymlee Added NCBI BLAST Evidence Accession: AXH48602 Query Range: (1-302) Target Range: (1-283) at 2019-01-18 10:06:40.0
tiffanymlee Added NCBI BLAST Evidence Accession: AUX83368 Query Range: (1-302) Target Range: (7-289) at 2019-01-18 10:06:40.0
tiffanymlee Added NCBI BLAST Evidence Accession: AXH70583 Query Range: (1-302) Target Range: (7-289) at 2019-01-18 10:06:40.0
tiffanymlee Added HHPRED Evidence Accession: 4MO1_A Description: Antitermination protein Q; Structural Genomics, PSI-Biology, Protein Structure; 2.099A {Enterobacteria phage lambda} Query Range: (31-59) Target Range: (80-116) at 2019-01-18 10:06:40.0
tiffanymlee Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 10:00:46.0
tiffanymlee Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-18 10:00:46.0
tiffanymlee Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 10:00:46.0
tiffanymlee Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 10:00:46.0
tiffanymlee changed note to function unknown at 2019-01-18 10:00:46.0
tiffanymlee changed the coding capacity to yes at 2019-01-18 10:00:46.0

Gene Number: 31
dcedwards changed synteny to Has two membrane domains. at 2019-04-06 00:03:45.0
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: membrane protein at 2019-04-06 00:03:06.0
dcedwards Added NCBI BLAST Evidence Accession: AXH48603 Query Range: (2-53) Target Range: (3-54) at 2019-04-06 00:03:06.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83369 Query Range: (1-53) Target Range: (1-53) at 2019-04-06 00:03:06.0
dcedwards Added HHPRED Evidence Accession: PF15471.6 Description: TMEM171 ; Transmembrane protein family 171 Query Range: (16-39) Target Range: (21-44) at 2019-04-06 00:03:06.0
dcedwards changed the gene function to membrane protein at 2019-04-06 00:03:06.0
dcedwards Added TmHmm evidence at 2019-04-06 00:03:06.0
faith changed starterator analysis to SS at 2019-02-06 09:18:06.0
tiffanymlee changed synteny to Gene 31 is unknown in the other phages within the EA2 subcluster and is followed by a gene for RecA-like DNA recombinase at 2019-02-05 11:26:48.0
leahdowell changed note to Hypothetical Protein (function unknown) at 2019-01-27 12:58:08.0
dcedwards changed the gene function to NKF at 2019-01-22 15:51:02.0
tiffanymlee Added NCBI BLAST Evidence Accession: AUX83369 Query Range: (1-53) Target Range: (1-53) at 2019-01-18 10:18:22.0
tiffanymlee changed the gene function to unknown at 2019-01-18 10:18:22.0
tiffanymlee changed note to function unknown at 2019-01-18 10:18:22.0
tiffanymlee Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-18 10:14:38.0
tiffanymlee Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-18 10:14:38.0
tiffanymlee Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-18 10:14:38.0
tiffanymlee changed the coding capacity to yes at 2019-01-18 10:14:38.0

Gene Number: 32
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: RecA-like DNA recombinase at 2019-04-06 00:04:50.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83370 Query Range: (1-560) Target Range: (1-560) at 2019-04-06 00:04:50.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48604 Query Range: (1-559) Target Range: (1-559) at 2019-04-06 00:04:50.0
dcedwards Added HHPRED Evidence Accession: 1XP8_A Description: RecA protein; Recombination, Radioresistance, DNA-repair, ATPase, DNA-binding; HET: AGS; 2.5A {Deinococcus radiodurans} SCOP: c.37.1.11, d.48.1.1 Query Range: (306-553) Target Range: (56-282) at 2019-04-06 00:04:50.0
faith changed starterator analysis to SS at 2019-02-06 09:18:36.0
stacyluka changed note to RecA-like DNA Recombinase based off BLAST and HHPred.

RecA-like DNA Recombinase is involved in homologous recombination. RecA proteins bind strongly to single-stranded DNA. at 2019-01-29 04:30:45.0
stacyluka changed synteny to Gene is found in the same location as similar bacteriophages.

This gene comes after a hypothetical protein of unknown function and is followed by a nuclease gene. at 2019-01-29 04:27:26.0
tiffanymlee changed synteny to Gene is found in the same location as similar bacteriophages. Comes before a nuclease. at 2019-01-24 13:33:36.0
tiffanymlee changed note to RecA-like DNA recombinase based off BLAST and HHPred at 2019-01-24 13:29:03.0
tiffanymlee Added HHPRED Evidence Accession: 1XP8_A Description: RecA protein; Recombination, Radioresistance, DNA-repair, ATPase, DNA-binding; HET: AGS; 2.5A {Deinococcus radiodurans} SCOP: d.48.1.1, c.37.1.11 Query Range: (306-560) Target Range: (56-289) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 3H25_A Description: Replication protein B/DNA complex; PROTEIN-DNA-COMPLEX, HAIRPIN DNA, MIXED ALPHA-BETA; 2.7A {Plasmid RSF1010} Query Range: (4-193) Target Range: (23-200) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 3H20_A Description: Replication protein B (E.C.2.7.7.-); primase, Nucleotidyltransferase, helix-bundle-domain, replication, RSF1010; HET: SO4; 1.99A {Plasmid RSF1010} Query Range: (5-244) Target Range: (10-267) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 3FYH_A Description: DNA repair and recombination protein; ATPase, RadA, Rad51, RecA, recombinase; HET: W, ADP; 1.9A {Methanococcus voltae} Query Range: (306-553) Target Range: (81-319) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 4TWZ_A Description: PROTEIN RECA; HOMOLOGOUS RECOMBINATION, DNA BINDING, RECOMBINATION; 2.8A {Escherichia coli K12} Query Range: (303-553) Target Range: (38-266) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 4QKQ_C Description: DNA repair and recombination protein; RadA, Rad51, DMC1, RecA, ATPase; HET: NO3, 35N; 2.0A {Methanococcus voltae} Query Range: (306-554) Target Range: (25-264) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 3HR8_A Description: Protein recA; Alpha and beta proteins (a/b; 1.95A {Thermotoga maritima} Query Range: (306-560) Target Range: (43-275) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 4PPF_A Description: Protein RecA, 1st part, 2nd; HOMOLOGOUS RECOMBINATION, DNA REPAIR, ATPASE; HET: FLC, EDO; 2.3A {Mycobacterium tuberculosis} Query Range: (303-560) Target Range: (39-274) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: cd00983 Description: recA; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. Query Range: (306-554) Target Range: (37-263) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 2G88_A Description: Protein recA; RECOMBINATION, DNA-REPAIR; HET: DTP, CIT; 3.2A {Mycobacterium smegmatis} Query Range: (303-560) Target Range: (40-275) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: PF00154.20 Description: RecA ; recA bacterial DNA recombination protein Query Range: (306-554) Target Range: (34-260) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 3IO5_B Description: Recombination and repair protein; storage dimer, inactive conformation, RecA; HET: PO4; 2.4A {Enterobacteria phage T4} Query Range: (306-560) Target Range: (8-246) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: 4HYY_A Description: Meiotic recombination protein DMC1/LIM15 homolog; RecA homolog, DNA strand exchange; 2.603A {Homo sapiens} Query Range: (306-555) Target Range: (19-253) at 2019-01-18 10:38:57.0
tiffanymlee Added HHPRED Evidence Accession: cd01393 Description: recA_like; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. Query Range: (306-542) Target Range: (2-222) at 2019-01-18 10:38:57.0
tiffanymlee Added Phages DB Evidence Phage Name: Andromedas Function: RecA-like DNA recombinase at 2019-01-18 10:22:29.0
tiffanymlee Added Phages DB Evidence Phage Name: ColaCorta Function: RecA-like DNA recombinase at 2019-01-18 10:22:29.0
tiffanymlee Added Phages DB Evidence Phage Name: Sansa Function: DNA recombinase at 2019-01-18 10:22:29.0
tiffanymlee Added Phages DB Evidence Phage Name: Eleri Function: DNA recombinase at 2019-01-18 10:22:29.0
tiffanymlee Added NCBI BLAST Evidence Accession: AXH70585 Query Range: (1-560) Target Range: (1-560) at 2019-01-18 10:22:29.0
tiffanymlee Added NCBI BLAST Evidence Accession: AUX83370 Query Range: (1-560) Target Range: (1-560) at 2019-01-18 10:22:29.0
tiffanymlee Added NCBI BLAST Evidence Accession: AXH48604 Query Range: (1-559) Target Range: (1-559) at 2019-01-18 10:22:29.0
tiffanymlee changed the gene function to RecA-like DNA Recombinase at 2019-01-18 10:22:29.0
tiffanymlee changed the coding capacity to yes at 2019-01-18 10:22:29.0

Gene Number: 33
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: nuclease at 2019-04-06 00:05:28.0
dcedwards Added CDD Evidence Accession: PRK02234 Query Range: (30-54) Target Range: (75-99) at 2019-04-06 00:05:28.0
dcedwards Added HHPRED Evidence Accession: 4QBO_A Description: Putative uncharacterized protein; nuclease, HYDROLASE; 1.3A {Streptococcus phage P9} Query Range: (1-95) Target Range: (4-89) at 2019-04-06 00:05:28.0
faith changed the coding capacity to yes at 2019-02-06 09:19:50.0
faith changed starterator analysis to SS at 2019-02-06 09:19:50.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: nuclease at 2019-01-19 05:53:08.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83371 Query Range: (1-95) Target Range: (1-95) at 2019-01-19 05:53:08.0
tiffanylujan Added HHPRED Evidence Accession: 4QBN_A Description: Uncharacterized protein; Nuclease, HYDROLASE; HET: SO4; 1.85A {Salmonella phage SETP3} Query Range: (1-95) Target Range: (2-92) at 2019-01-19 05:53:08.0
tiffanylujan changed the gene function to nuclease at 2019-01-19 05:53:08.0
tiffanylujan changed synteny to Closely related bacteriophages have this same gene in the same area. at 2019-01-19 05:53:08.0

Gene Number: 34
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:08:42.0
dcedwards Added CDD Evidence Accession: pfam05037 Query Range: (23-116) Target Range: (14-121) at 2019-04-06 00:08:42.0
dcedwards Added HHPRED Evidence Accession: PF09124.10 Description: Endonuc-dimeris ; T4 recombination endonuclease VII, dimerisation Query Range: (168-207) Target Range: (8-48) at 2019-04-06 00:08:42.0
faith changed the coding capacity to yes at 2019-02-06 09:20:29.0
faith changed starterator analysis to SS at 2019-02-06 09:20:29.0
clcabrera changed note to Strong evidence that it is a DUF669. Permuted gene at 2019-01-28 18:33:08.0
clcabrera changed synteny to Other EA2 clusters have a gene in the same area like DUF669, which is NKF at 2019-01-28 18:33:08.0
dcedwards changed the gene function to NKF at 2019-01-22 15:51:35.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:04:16.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:04:16.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83372 Query Range: (1-270) Target Range: (1-270) at 2019-01-19 06:04:16.0
tiffanylujan Added HHPRED Evidence Accession: PF05037.12 Description: DUF669 ; Protein of unknown function (DUF669) Query Range: (5-129) Target Range: (1-128) at 2019-01-19 06:04:16.0
tiffanylujan changed the gene function to Unknown at 2019-01-19 06:04:16.0
tiffanylujan changed note to Strong evidence that it is a DUF669 at 2019-01-19 06:04:16.0

Gene Number: 35
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: AAA-ATPase at 2019-04-06 00:09:11.0
dcedwards Added CDD Evidence Accession: pfam13479 Query Range: (6-196) Target Range: (7-195) at 2019-04-06 00:09:11.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX82998 Query Range: (1-222) Target Range: (1-222) at 2019-04-06 00:09:11.0
dcedwards Added HHPRED Evidence Accession: PF13479.6 Description: AAA_24 ; AAA domain Query Range: (1-196) Target Range: (2-213) at 2019-04-06 00:09:11.0
faith changed the coding capacity to yes at 2019-02-06 09:21:30.0
faith changed starterator analysis to SS at 2019-02-06 09:21:30.0
tiffanylujan changed the gene function to AAA-ATPase at 2019-01-19 06:17:02.0
tiffanylujan changed synteny to Other closely related bacteriophages also have the same gene and in a relatively similar proximity in the genome. at 2019-01-19 06:17:02.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: AAA-ATPase at 2019-01-19 06:12:03.0
tiffanylujan Added Phages DB Evidence Phage Name: Andromedas Function: AAA-ATPase at 2019-01-19 06:12:03.0
tiffanylujan Added Phages DB Evidence Phage Name: ColaCorta Function: AAA-ATPase at 2019-01-19 06:12:03.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: AAA-ATPase at 2019-01-19 06:12:03.0
tiffanylujan Added Phages DB Evidence Phage Name: Knox Function: AAA-ATPase at 2019-01-19 06:12:03.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83373 Query Range: (1-222) Target Range: (1-222) at 2019-01-19 06:12:03.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX82998 Query Range: (1-222) Target Range: (1-222) at 2019-01-19 06:12:03.0
tiffanylujan Added HHPRED Evidence Accession: PF13479.5 Description: AAA_24 ; AAA domain Query Range: (2-196) Target Range: (3-213) at 2019-01-19 06:12:03.0

Gene Number: 36
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:12:58.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83374 Query Range: (1-45) Target Range: (1-45) at 2019-04-06 00:12:58.0
dcedwards Added HHPRED Evidence Accession: PF05129.13 Description: Elf1 ; Transcription elongation factor Elf1 like Query Range: (2-15) Target Range: (17-30) at 2019-04-06 00:12:58.0
faith changed the coding capacity to yes at 2019-02-06 09:22:23.0
faith changed starterator analysis to SS at 2019-02-06 09:22:23.0
dcedwards changed the gene function to NKF at 2019-01-22 15:52:12.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:22:42.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:22:42.0
tiffanylujan Added NCBI BLAST Evidence Accession: AXH48608 Query Range: (1-45) Target Range: (1-45) at 2019-01-19 06:22:42.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83374 Query Range: (1-45) Target Range: (1-45) at 2019-01-19 06:22:42.0
tiffanylujan changed the gene function to Unknown at 2019-01-19 06:22:42.0
tiffanylujan changed note to Hypothetical protein but HHPRED results show that it could be an Elf1 ; Transcription elongation factor Elf1 like protein with 91.63% probability. at 2019-01-19 06:22:42.0

Gene Number: 37
dcedwards Added Phages DB Evidence Phage Name: Schubert Function: Cas4-like exonuclease at 2019-04-06 00:14:54.0
dcedwards Added NCBI BLAST Evidence Accession: AZV01742 Query Range: (2-387) Target Range: (9-394) at 2019-04-06 00:14:54.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83375 Query Range: (1-387) Target Range: (10-396) at 2019-04-06 00:14:54.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48609 Query Range: (1-387) Target Range: (1-387) at 2019-04-06 00:14:54.0
dcedwards Added HHPRED Evidence Accession: 4IC1_D Description: Uncharacterized protein; Cas4, CRISPR, MCSG, Exonuclease, PSI-Biology; HET: MN, SF4; 2.35A {Sulfolobus solfataricus} Query Range: (29-352) Target Range: (23-202) at 2019-04-06 00:14:54.0
dcedwards Added HHPRED Evidence Accession: PF09810.9 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (30-352) Target Range: (10-336) at 2019-04-06 00:14:54.0
dcedwards changed the gene function to Cas4 family exonuclease at 2019-04-06 00:14:54.0
faith changed starterator analysis to SS at 2019-02-06 09:23:23.0
tiffanymlee changed synteny to Closely related bacteriophages have this gene in the same location. Comes before a DNA polymerase I. at 2019-01-24 13:39:15.0
stacyluka changed note to Phagesdb BLAST – Schubert (EA8) Cas4-like exonuclease, e-value = 0
HHpred – Closest match was PF06023.12 (Csa1 ; CRISPR-associated exonuclease Csa1) – Was not able to select as evidence
Another good match that was selected as evidence – PF06023.11 (Cas4_I-A; CRISPR/Cas system-associated protein Cas4.)
ATP-Dependent Helicase/Nuclease
NCBI BLAST – Query Cover = 100% and E-Value = 0 for phages Eleri and Sansa (Also EA2)
No transmembrane regions as expected for an exonuclease at 2019-01-19 05:48:54.0
stacyluka changed note to Phagesdb BLAST – Schubert (EA8) Cas4-like exonuclease, e-value = 0
HHpred – Closest match was PF06023.12 (Csa1 ; CRISPR-associated exonuclease Csa1) – Was not able to select as evidence
Another good match that was selected as evidence – PF06023.11 (Cas4_I-A; CRISPR/Cas system-associated protein Cas4.)
ATP-Dependent Helicase/Nuclease
NCBI BLAST – Query Cover = 100% and E-Value = 0 for phages Eleri and Sansa (Also EA2) at 2019-01-19 05:47:45.0
stacyluka Added HHPRED Evidence Accession: PF12705.6 Description: PDDEXK_1 ; PD-(D/E)XK nuclease superfamily Query Range: (33-351) Target Range: (1-242) at 2019-01-19 05:45:25.0
stacyluka Added HHPRED Evidence Accession: cd09659 Description: ATP-DEPENDENT HELICASE/NUCLEASE SUBUNIT A (E.C.3.1.-.-; HYDROLASE-DNA COMPLEX, HELICASE-NUCLEASE, BACTERIAL PROTEINS; HET: ANP; 2.8A {BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168} Query Range: (26-351) Target Range: (27-269) at 2019-01-19 05:45:25.0
stacyluka Added HHPRED Evidence Accession: PF06023.11 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (24-351) Target Range: (38-280) at 2019-01-19 05:45:25.0
stacyluka Added HHPRED Evidence Accession: 3H4R_A Description: ATP-DEPENDENT HELICASE/NUCLEASE SUBUNIT A (E.C.3.1.-.-; HYDROLASE-DNA COMPLEX, HELICASE-NUCLEASE, DNA BREAKS; HET: ANP; 3.0A {BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168} Query Range: (31-225) Target Range: (10-208) at 2019-01-19 05:45:25.0
stacyluka changed note to Phagesdb BLAST – Schubert (EA8) Cas4-like exonuclease, e-value = 0
HHpred – Closest match was PF06023.12 (Csa1 ; CRISPR-associated exonuclease Csa1) – Was not able to select as evidence
Another good match that was selected as evidence – PF06023.11 (Cas4_I-A; CRISPR/Cas system-associated protein Cas4.)
ATP-Dependent Helicase/Nuclease at 2019-01-19 05:45:25.0
stacyluka Added NCBI BLAST Evidence Accession: AUX83375 Query Range: (1-387) Target Range: (10-396) at 2019-01-19 05:39:34.0
stacyluka Added NCBI BLAST Evidence Accession: AXH48609 Query Range: (1-387) Target Range: (1-387) at 2019-01-19 05:39:34.0
stacyluka changed note to Phagesdb BLAST – Schubert (EA8) Cas4-like exonuclease, e-value = 0
HHpred – Closest match was PF06023.12 (Csa1 ; CRISPR-associated exonuclease Csa1) at 2019-01-19 05:38:15.0
stacyluka changed note to Phagesdb BLAST – Schubert (EA8) Cas4-like exonuclease, e-value = 0 at 2019-01-19 05:18:26.0
stacyluka Added Phages DB Evidence Phage Name: ColaCorta Function: exonuclease at 2019-01-19 05:15:24.0
stacyluka Added Phages DB Evidence Phage Name: Andromedas Function: exonuclease at 2019-01-19 05:15:24.0
stacyluka Added Phages DB Evidence Phage Name: Eleri Function: exonuclease at 2019-01-19 05:15:24.0
stacyluka Added Phages DB Evidence Phage Name: Sansa Function: exonuclease at 2019-01-19 05:15:24.0
stacyluka changed the coding capacity to yes at 2019-01-19 05:15:24.0
stacyluka changed the gene function to exonuclease at 2019-01-18 10:12:43.0
stacyluka changed note to Exonuclease at 2019-01-18 10:12:43.0

Gene Number: 38
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: DNA polymerase I at 2019-04-06 00:15:26.0
dcedwards Added CDD Evidence Accession: COG0749 Query Range: (9-614) Target Range: (9-590) at 2019-04-06 00:15:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70591 Query Range: (1-621) Target Range: (1-621) at 2019-04-06 00:15:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48610 Query Range: (1-621) Target Range: (1-621) at 2019-04-06 00:15:26.0
dcedwards Added HHPRED Evidence Accession: 2KFN_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; COMPLEX (POLYMERASE-DNA), EXONUCLEASE, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: c.55.3.5, e.8.1.1 Query Range: (1-616) Target Range: (5-604) at 2019-04-06 00:15:26.0
faith changed starterator analysis to SS at 2019-02-06 09:23:53.0
stacyluka changed synteny to This gene is between genes for exonuclease and a hypothetical protein of unknown function. at 2019-01-29 04:23:59.0
stacyluka changed synteny to Between genes for exonuclease and a hypothetical protein of unknown function at 2019-01-19 06:40:30.0
stacyluka Added NCBI BLAST Evidence Accession: AXH48610 Query Range: (1-621) Target Range: (1-621) at 2019-01-19 06:17:09.0
stacyluka Added NCBI BLAST Evidence Accession: AUX83376 Query Range: (1-621) Target Range: (1-621) at 2019-01-19 06:17:09.0
stacyluka Added NCBI BLAST Evidence Accession: AXH70591 Query Range: (1-621) Target Range: (1-621) at 2019-01-19 06:17:09.0
stacyluka Added HHPRED Evidence Accession: 2KFZ_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 Query Range: (2-617) Target Range: (6-605) at 2019-01-19 06:17:09.0
stacyluka changed note to Pham Starterator – Start 14 found 11.7%, other EA2’s found at this start
Phagesdb BLAST – Others in subcluster annotated as DNA Polymerase I (E value = 0, same sequence lengths of 621 bp)
HHpred – detected coiled-coil segments in the query protein
2KFZ_A – Klenow fragment of DNA polymerase
NCBI – Query Cover 100% and E value = 0 for ColaCorta, Eleri, and Sansa
No transmembrane regions as expected for a DNA polymerase at 2019-01-19 06:17:09.0
stacyluka changed synteny to Located next to exonuclease at 2019-01-19 06:17:09.0
stacyluka changed note to Pham Starterator – Start 14 found 11.7%, other EA2’s found at this start
Phagesdb BLAST – Others in subcluster annotated as DNA Polymerase I (E value = 0, same sequence lengths of 621 bp)
NCBI – Query Cover 100% and E value = 0 for ColaCorta, Eleri, and Sansa
No transmembrane regions as expected for a DNA polymerase at 2019-01-19 06:08:46.0
stacyluka changed the coding capacity to yes at 2019-01-19 06:00:57.0
stacyluka Added Phages DB Evidence Phage Name: ColaCorta Function: DNA polymerase I at 2019-01-19 05:58:17.0
stacyluka Added Phages DB Evidence Phage Name: Andromedas Function: DNA polymerase I at 2019-01-19 05:58:17.0
stacyluka Added Phages DB Evidence Phage Name: Sansa Function: DNA polymerase I at 2019-01-19 05:58:17.0
stacyluka Added Phages DB Evidence Phage Name: Eleri Function: DNA polymerase I at 2019-01-19 05:58:17.0
stacyluka changed note to Pham Starterator – Start 14 found 11.7%, other EA2’s found at this start
Phagesdb BLAST – Others in subcluster annotated as DNA Polymerase I (E value = 0, same sequence lengths of 621 bp) at 2019-01-19 05:58:17.0
stacyluka changed the gene function to DNA polymerase I at 2019-01-19 05:55:52.0
stacyluka changed note to Pham Starterator – Start 14 found 11.7%, other EA2’s found at this start at 2019-01-19 05:55:52.0

Gene Number: 39
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-04-06 00:16:01.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83377 Query Range: (1-134) Target Range: (1-131) at 2019-04-06 00:16:01.0
dcedwards Added HHPRED Evidence Accession: PF00959.19 Description: Phage_lysozyme ; Phage lysozyme Query Range: (24-74) Target Range: (28-87) at 2019-04-06 00:16:01.0
faith changed starterator analysis to SS at 2019-02-06 09:24:38.0
dcedwards changed the gene function to NKF at 2019-01-22 15:53:00.0
stacyluka changed synteny to Between genes for DNA Polymerase I and DNA Helicase, possibly involved with DNA replication? at 2019-01-19 06:39:54.0
stacyluka changed note to Pham starterator – Start 12, (7.8%), other EA2 at this start
HHpred – closest match 2W1O_A (acidic ribosomal protein) homo sapien?
NCBI – Hypothetical protein in Sansa and Eleri (Query Cover = 100% and E value= 0) at 2019-01-19 06:32:55.0
stacyluka Added NCBI BLAST Evidence Accession: AUX83377 Query Range: (1-134) Target Range: (1-131) at 2019-01-19 06:29:59.0
stacyluka Added NCBI BLAST Evidence Accession: AXH48611 Query Range: (1-134) Target Range: (1-131) at 2019-01-19 06:29:59.0
stacyluka changed note to HHpred – closest match 2W1O_A (acidic ribosomal protein) homo sapien?
NCBI – Hypothetical protein in Sansa and Eleri (Query Cover = 100% and E value= 0) at 2019-01-19 06:29:59.0
stacyluka changed note to HHpred – closest match 2W1O_A (acidic ribosomal protein) homo sapien?
NCBI – Hypothetical protein in Sansa and Eleri (Query Cover = 100% and E value= 0) at 2019-01-19 06:29:15.0
stacyluka Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:25:24.0
stacyluka Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 06:25:24.0
stacyluka Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 06:25:24.0
stacyluka Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:25:24.0
stacyluka changed the gene function to Unknown at 2019-01-19 06:25:24.0
stacyluka changed the coding capacity to yes at 2019-01-19 06:20:07.0

Gene Number: 40
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: DNA helicase at 2019-04-06 00:17:26.0
dcedwards Added CDD Evidence Accession: cd00046 Query Range: (12-151) Target Range: (5-144) at 2019-04-06 00:17:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48612 Query Range: (1-458) Target Range: (13-470) at 2019-04-06 00:17:26.0
dcedwards Added HHPRED Evidence Accession: 5VVR_M Description: RuvB-like helicase (E.C.3.6.4.12), Ino80, Uncharacterized; INO80, Nucleosome, ATP dependent Chromatin; HET: ATP, ADP; 4.34A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)} Query Range: (6-458) Target Range: (314-812) at 2019-04-06 00:17:26.0
faith changed starterator analysis to SS at 2019-02-06 09:25:29.0
stacyluka changed synteny to This gene is between hypothetical proteins of unknown functions. at 2019-01-29 04:25:31.0
stacyluka Added NCBI BLAST Evidence Accession: AXH48612 Query Range: (1-458) Target Range: (13-470) at 2019-01-19 07:03:21.0
stacyluka Added NCBI BLAST Evidence Accession: AUX83378 Query Range: (1-458) Target Range: (13-470) at 2019-01-19 07:03:21.0
stacyluka changed note to Pham starterator – Start 19 found in 9.1%, only called in 14.3% of time when present. Other EA2’s at start 16.
HHpred – Many hits with 100% probability and e values of nearly 0;
6GEJ_M (Vacuolar protein sorting-associated protein 72)
NCBI – Eleri and Sansa (100% Query Cover and E value or 0) – DNA helicase
No transmembrane region as expected with DNA helicase at 2019-01-19 07:02:04.0
stacyluka changed note to Pham starterator – Start 19 found in 9.1%, only called in 14.3% of time when present. Other EA2’s at start 16. at 2019-01-19 06:54:20.0
stacyluka Added Phages DB Evidence Phage Name: Andromedas Function: DNA helicase at 2019-01-19 06:51:43.0
stacyluka Added Phages DB Evidence Phage Name: ColaCorta Function: DNA helicase at 2019-01-19 06:51:43.0
stacyluka Added Phages DB Evidence Phage Name: Eleri Function: DNA helicase at 2019-01-19 06:51:43.0
stacyluka Added Phages DB Evidence Phage Name: Sansa Function: DNA helicase at 2019-01-19 06:51:43.0
stacyluka changed note to Pham starterator – Start 19 found in 9.1%, only called in 14.3% of time when present at 2019-01-19 06:46:58.0
stacyluka changed the gene function to DNA helicase at 2019-01-19 06:38:41.0
stacyluka changed synteny to Next to a hypothetical protein of unknown function at 2019-01-19 06:38:41.0
stacyluka changed the coding capacity to yes at 2019-01-19 06:36:26.0

Gene Number: 41
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:17:50.0
dcedwards Added HHPRED Evidence Accession: 2OMD_B Description: Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, Structural Genomics; HET: GOL; 2.0A {Aquifex aeolicus} Query Range: (4-46) Target Range: (60-92) at 2019-04-06 00:17:50.0
abbigalr changed the start site to 31077 at 2019-02-06 10:25:48.0
faith changed the coding capacity to yes at 2019-02-06 09:29:11.0
faith changed synteny to Gene 41 follows a DNA helicase in Finny and other closely related genomes. Following gene 41 in Finny and other closely related phages is a protein of unknown function. at 2019-02-06 09:29:11.0
faith changed starterator analysis to SS at 2019-02-06 09:29:11.0
dcedwards changed the gene function to NKF at 2019-01-22 15:53:29.0
tiffanylujan Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-17 05:18:40.0
tiffanylujan Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-17 05:18:40.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-17 05:18:40.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-17 05:18:40.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83379 Query Range: (1-46) Target Range: (1-46) at 2019-01-17 05:18:40.0
tiffanylujan changed the gene function to Unkown at 2019-01-17 05:18:40.0
tiffanylujan changed note to Potentially redox enzymes based on a 83.25% on HHpred. pyrophosphohydrolase based off of information gathered from Phamerator. at 2019-01-17 05:18:40.0

Gene Number: 42
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:18:23.0
dcedwards Added NCBI BLAST Evidence Accession: AXH70595 Query Range: (1-83) Target Range: (10-92) at 2019-04-06 00:18:23.0
dcedwards Added HHPRED Evidence Accession: PF11726.8 Description: Inovirus_Gp2 ; Inovirus Gp2 Query Range: (25-80) Target Range: (34-97) at 2019-04-06 00:18:23.0
faith changed synteny to Gene 42 follows a protein of unknown function in Finny and other closely related phages. It comes before a MazG-like nucleotide pyrophosphohydrolase in Finny, Andromedas, ColaCorta, and Eleri. at 2019-02-06 09:32:11.0
faith changed the coding capacity to yes at 2019-02-06 09:29:45.0
faith changed starterator analysis to SS at 2019-02-06 09:29:45.0
dcedwards changed the gene function to NKF at 2019-01-22 15:53:41.0
tiffanylujan changed the gene function to Unknown at 2019-01-17 05:28:08.0
tiffanylujan changed note to Most likely a receptor for hyperpolarizing the cell based off of information from HHpred. at 2019-01-17 05:28:08.0

Gene Number: 43
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: MazG-like nucleotide pyrophosphohydrolase at 2019-04-06 00:18:57.0
dcedwards Added CDD Evidence Accession: cd11545 Query Range: (6-110) Target Range: (3-97) at 2019-04-06 00:18:57.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83381 Query Range: (1-147) Target Range: (1-147) at 2019-04-06 00:18:57.0
dcedwards Added HHPRED Evidence Accession: 2YF4_F Description: MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE (E.C.3.6.1.19); HYDROLASE, DIMERIC DUTPASE; HET: GOL, SO4; 1.7A {DEINOCOCCUS RADIODURANS} Query Range: (1-138) Target Range: (13-151) at 2019-04-06 00:18:57.0
dcedwards changed synteny to Gene 43 is a GTPase, that originates from E coli. Other phages in the same cluster share the same functionality of the same gene. at 2019-04-06 00:18:57.0
faith changed the coding capacity to yes at 2019-02-06 09:32:53.0
faith changed starterator analysis to SS at 2019-02-06 09:32:53.0
kayla3498 changed synteny to Gene 43 is a GTPas, that originates from E coli. Other phages in the same cluster share the same functionality of the same gene. at 2019-01-27 17:32:12.0
tiffanylujan Added Phages DB Evidence Phage Name: Andromedas Function: MazG-like nucleotide pyrophosphohydrolase at 2019-01-17 05:41:20.0
tiffanylujan Added Phages DB Evidence Phage Name: ColaCorta Function: MazG-like nucleotide pyrophosphohydrolase at 2019-01-17 05:41:20.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: nucleotide pyrophosphohydrolase at 2019-01-17 05:41:20.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: nucleotide pyrophosphohydrolase at 2019-01-17 05:41:20.0
tiffanylujan Added NCBI BLAST Evidence Accession: AXH48615 Query Range: (1-147) Target Range: (1-147) at 2019-01-17 05:41:20.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83381 Query Range: (1-147) Target Range: (1-147) at 2019-01-17 05:41:20.0
tiffanylujan Added HHPRED Evidence Accession: 2RFP_A Description: Putative NTP pyrophosphohydrolase; Putative NTP Pyrophosphohydrolase, Structural Genomics; 1.74A {Exiguobacterium sibiricum} Query Range: (1-128) Target Range: (4-158) at 2019-01-17 05:41:20.0
tiffanylujan Added HHPRED Evidence Accession: 2YF4_E Description: MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE (E.C.3.6.1.19); HYDROLASE, DIMERIC DUTPASE; HET: GOL, SO4; 1.7A {DEINOCOCCUS RADIODURANS} Query Range: (1-135) Target Range: (13-148) at 2019-01-17 05:41:20.0
tiffanylujan Added HHPRED Evidence Accession: cd11545 Description: NTP-PPase_YP_001813558; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Exiguobacterium sibiricum YP_001813558. Query Range: (4-129) Target Range: (1-112) at 2019-01-17 05:41:20.0
tiffanylujan changed the gene function to MazG-like nucleotide pyrophosphohydrolase at 2019-01-17 05:41:20.0
tiffanylujan changed synteny to Its a GTPas, that originates from E coli. Other phages in the same cluster share the same functionality of the same gene. at 2019-01-17 05:41:20.0

Gene Number: 44
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:21:43.0
dcedwards Added HHPRED Evidence Accession: PF16148.5 Description: DUF4856 ; Domain of unknown function (DUF4856) Query Range: (171-245) Target Range: (270-336) at 2019-04-06 00:21:43.0
faith changed the coding capacity to yes at 2019-02-06 09:33:54.0
faith changed starterator analysis to SS at 2019-02-06 09:33:54.0
dcedwards changed the gene function to NKF at 2019-01-22 15:53:56.0
tiffanylujan Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-17 05:47:37.0
tiffanylujan Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-17 05:47:37.0
tiffanylujan Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-17 05:47:37.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX83382 Query Range: (1-259) Target Range: (1-259) at 2019-01-17 05:47:37.0
tiffanylujan changed the gene function to Unknown at 2019-01-17 05:47:37.0

Gene Number: 45
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: thymidylate kinase at 2019-04-06 00:22:11.0
dcedwards Added CDD Evidence Accession: PRK00698 Query Range: (1-38) Target Range: (4-60) at 2019-04-06 00:22:11.0
dcedwards Added HHPRED Evidence Accession: 3TMK_A Description: THYMIDYLATE KINASE, P1-(5′-ADENOSYL)P5-(5′-THYMIDYL)PENTAPHOSPHATE; KINASE, PHOSPHOTRANSFERASE; HET: T5A; 2.0A {Saccharomyces cerevisiae} SCOP: c.37.1.1 Query Range: (1-121) Target Range: (6-169) at 2019-04-06 00:22:11.0
faith changed starterator analysis to SS at 2019-02-06 09:34:23.0
david changed synteny to Similar phages in the EA2 subgroup have the same gene at this location. Proceeds a glycosyltransferase gene. at 2019-01-27 11:11:30.0
dcedwards changed note to Determine better whether adenylate kinase or thymidylate kinase. HHPred website shows strong prediction for thymidylate kinase. at 2019-01-23 04:10:24.0
dcedwards changed the gene function to thymidylate kinase at 2019-01-22 15:58:58.0
dcedwards changed note to Determine better whether adenylate kinase or thymidylate kinase. at 2019-01-22 15:58:58.0
dcedwards changed the gene function to adenylate kinase at 2019-01-22 15:56:22.0
rheavensandoval Added Phages DB Evidence Phage Name: Sansa Function: thymidylate kinase at 2019-01-20 18:12:07.0
rheavensandoval Added Phages DB Evidence Phage Name: Andromedas Function: thymidylate kinase at 2019-01-20 18:12:07.0
rheavensandoval Added Phages DB Evidence Phage Name: ColaCorta Function: thymidylate kinase at 2019-01-20 18:12:07.0
rheavensandoval Added NCBI BLAST Evidence Accession: AXH48617 Query Range: (1-192) Target Range: (1-192) at 2019-01-20 18:12:07.0
rheavensandoval changed the gene function to thymidylate kinase at 2019-01-20 18:12:07.0
rheavensandoval changed the coding capacity to yes at 2019-01-20 18:12:07.0
rheavensandoval changed the start site to 33132 at 2019-01-20 18:00:13.0

Gene Number: 46
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: glycosyltransferase at 2019-04-06 00:22:36.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70599 Query Range: (1-316) Target Range: (1-316) at 2019-04-06 00:22:36.0
dcedwards Added HHPRED Evidence Accession: 1QG8_A Description: Glyco_tranf_2_3 ; Glycosyltransferase like family 2 Query Range: (15-234) Target Range: (1-211) at 2019-04-06 00:22:36.0
faith changed starterator analysis to SS at 2019-02-06 09:35:02.0
tiffanymlee changed synteny to Closely related bacteriophages have this gene in the same location. Follows a gene for thymidylate kinase. at 2019-01-24 13:35:55.0
rheavensandoval changed the coding capacity to yes at 2019-01-20 18:25:15.0
rheavensandoval changed the start site to 34082 at 2019-01-20 18:23:26.0
rheavensandoval Added Phages DB Evidence Phage Name: Eleri Function: glycosyltransferase at 2019-01-20 18:19:40.0
rheavensandoval Added Phages DB Evidence Phage Name: Andromedas Function: glycosyltransferase at 2019-01-20 18:19:40.0
rheavensandoval Added Phages DB Evidence Phage Name: ColaCorta Function: glycosyltransferase at 2019-01-20 18:19:40.0
rheavensandoval Added NCBI BLAST Evidence Accession: AUX83384 Query Range: (1-316) Target Range: (1-316) at 2019-01-20 18:19:40.0
rheavensandoval Added NCBI BLAST Evidence Accession: AXH70599 Query Range: (1-316) Target Range: (1-316) at 2019-01-20 18:19:40.0
rheavensandoval changed the gene function to glycosyltransferase at 2019-01-20 18:19:40.0

Gene Number: 47
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:23:00.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83385 Query Range: (1-61) Target Range: (12-72) at 2019-04-06 00:23:00.0
dcedwards Added HHPRED Evidence Accession: PF11347.8 Description: DUF3148 ; Protein of unknown function (DUF3148) Query Range: (20-58) Target Range: (22-59) at 2019-04-06 00:23:00.0
faith changed starterator analysis to SS at 2019-02-06 09:35:36.0
dcedwards changed the gene function to NKF at 2019-01-22 15:59:15.0
rheavensandoval changed the gene function to unknown at 2019-01-20 18:28:20.0
rheavensandoval changed the coding capacity to yes at 2019-01-20 18:27:50.0

Gene Number: 48
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:23:46.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83386 Query Range: (1-48) Target Range: (1-48) at 2019-04-06 00:23:46.0
dcedwards Added HHPRED Evidence Accession: PF12273.8 Description: RCR ; Chitin synthesis regulation, resistance to Congo red Query Range: (13-40) Target Range: (2-29) at 2019-04-06 00:23:46.0
faith changed synteny to Gene 48 is between two proteins of unknown functions. Other closely related phages also have this arrangement. at 2019-02-06 09:37:00.0
faith changed starterator analysis to SS at 2019-02-06 09:37:00.0
dcedwards changed the gene function to NKF at 2019-01-22 15:59:32.0
rheavensandoval changed the gene function to Unknown at 2019-01-20 18:32:54.0
rheavensandoval changed the coding capacity to yes at 2019-01-20 18:32:54.0

Gene Number: 49
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:24:48.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83387 Query Range: (1-55) Target Range: (1-55) at 2019-04-06 00:24:48.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48621 Query Range: (1-55) Target Range: (1-55) at 2019-04-06 00:24:48.0
dcedwards Added HHPRED Evidence Accession: PF11511.8 Description: RhodobacterPufX ; Intrinsic membrane protein PufX Query Range: (12-53) Target Range: (17-58) at 2019-04-06 00:24:48.0
faith changed the coding capacity to yes at 2019-02-06 09:37:27.0
faith changed starterator analysis to SS at 2019-02-06 09:37:27.0
kayla3498 changed synteny to There is no known function for gene 49. There is a hypothetical protein before gene 49 and a ThyX thymidylate synthase after the gene. at 2019-01-27 17:25:50.0
david changed the gene function to NKF at 2019-01-27 11:41:42.0
david changed note to HHpred showed on the hitlist that an Intrinsic membrane protein for photosynthesis for Rhodobacter spheroids (a photosynthetic bacterium) had a 92.67 probability and an e-value of 0.41. at 2019-01-27 11:38:42.0
kennethunderhill Added Phages DB Evidence Phage Name: Sansa Function: membrane protein at 2019-01-19 06:42:00.0
kennethunderhill Added NCBI BLAST Evidence Accession: AXH48621 Query Range: (1-55) Target Range: (1-55) at 2019-01-19 06:42:00.0
kennethunderhill Added HHPRED Evidence Accession: PF11511.7 Description: RhodobacterPufX ; Intrinsic membrane protein PufX Query Range: (12-53) Target Range: (17-58) at 2019-01-19 06:42:00.0
kennethunderhill Added HHPRED Evidence Accession: PF10762.8 Description: DUF2583 ; Protein of unknown function (DUF2583) Query Range: (5-32) Target Range: (8-35) at 2019-01-19 06:42:00.0
kennethunderhill changed the gene function to membrane protein at 2019-01-19 06:42:00.0
kennethunderhill changed note to HHpred showed on the hitlist that a Intrinsic membrane protein for photosynthesis for Rhodobacter sphaeroides had a 92.67 probability. at 2019-01-19 06:42:00.0

Gene Number: 50
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: ThyX-like thymidylate synthase at 2019-04-06 00:25:20.0
dcedwards Added CDD Evidence Accession: cd00351 Query Range: (50-225) Target Range: (56-211) at 2019-04-06 00:25:20.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48622 Query Range: (1-252) Target Range: (3-254) at 2019-04-06 00:25:20.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83388 Query Range: (1-252) Target Range: (3-254) at 2019-04-06 00:25:20.0
dcedwards Added HHPRED Evidence Accession: 6AUJ_C Description: Thymidylate synthase (E.C.2.1.1.45); SSGCID, Structural Genomics, Elizabethkingia anophelis; HET: M0H, PGE; 1.7A {Elizabethkingia anophelis NUHP1} Query Range: (4-251) Target Range: (10-246) at 2019-04-06 00:25:20.0
faith changed the coding capacity to yes at 2019-02-06 09:38:28.0
faith changed starterator analysis to SS at 2019-02-06 09:38:28.0
kennethunderhill changed synteny to A membrane protein gene is before this and a hypothetical protein is after this. at 2019-01-19 15:16:12.0
kennethunderhill Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 10:25:05.0
kennethunderhill Added NCBI BLAST Evidence Accession: AXH70603 Query Range: (1-252) Target Range: (3-254) at 2019-01-19 10:25:05.0
kennethunderhill Added NCBI BLAST Evidence Accession: AXH48622 Query Range: (1-252) Target Range: (3-254) at 2019-01-19 10:25:05.0
kennethunderhill Added NCBI BLAST Evidence Accession: AUX83388 Query Range: (1-252) Target Range: (3-254) at 2019-01-19 10:25:05.0
kennethunderhill Added HHPRED Evidence Accession: 4IW5_A Description: Thymidylate synthase (E.C.2.1.1.45); alpha/beta protein, methyltransferase, methylenetetrahydrofolate, antifolate; HET: UMC, CB3; 1.3A {Escherichia coli} Query Range: (8-248) Target Range: (6-235) at 2019-01-19 10:25:05.0
kennethunderhill changed the gene function to ThyX thymidylate synthase at 2019-01-19 10:25:05.0

Gene Number: 51
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-04-06 00:25:37.0
dcedwards Added HHPRED Evidence Accession: PF06315.11 Description: AceK ; Isocitrate dehydrogenase kinase/phosphatase (AceK) Query Range: (43-78) Target Range: (322-352) at 2019-04-06 00:25:37.0
faith changed the coding capacity to yes at 2019-02-06 09:38:52.0
faith changed starterator analysis to SS at 2019-02-06 09:38:52.0
dcedwards changed the gene function to NKF at 2019-01-22 16:03:36.0
kennethunderhill changed synteny to A thymidylate synthase gene is before this and a hypothetical protein is after this. at 2019-01-19 15:17:53.0
kennethunderhill Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 11:22:18.0
kennethunderhill Added NCBI BLAST Evidence Accession: AXH48623 Query Range: (1-81) Target Range: (1-81) at 2019-01-19 11:22:18.0
kennethunderhill changed the gene function to hypothetical protein at 2019-01-19 11:22:18.0
kennethunderhill changed note to This hypothetical protein was a complete match to a hypothetical protein in Microbacterium phage Sansa. at 2019-01-19 11:22:18.0

Gene Number: 52
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:25:53.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48624 Query Range: (1-119) Target Range: (1-119) at 2019-04-06 00:25:53.0
dcedwards Added HHPRED Evidence Accession: PF12800.7 Description: Fer4_4 ; 4Fe-4S binding domain Query Range: (49-75) Target Range: (3-29) at 2019-04-06 00:25:53.0
faith changed the coding capacity to yes at 2019-02-06 09:39:17.0
faith changed starterator analysis to SS at 2019-02-06 09:39:17.0
dcedwards changed the gene function to NKF at 2019-01-22 16:04:06.0
kennethunderhill changed synteny to A hypothetical protein comes before this. at 2019-01-19 15:18:47.0
kennethunderhill Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 12:34:20.0
kennethunderhill Added NCBI BLAST Evidence Accession: AUX83390 Query Range: (1-119) Target Range: (1-119) at 2019-01-19 12:34:20.0
kennethunderhill Added NCBI BLAST Evidence Accession: AXH48624 Query Range: (1-119) Target Range: (1-119) at 2019-01-19 12:34:20.0
kennethunderhill changed the gene function to hypothetical protein at 2019-01-19 12:34:20.0

Gene Number: 53
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:26:18.0
dcedwards Added HHPRED Evidence Accession: 2DK7_A Description: Transcription elongation regulator 1; structural genomics, WW domain, Transcription; NMR {Homo sapiens} Query Range: (18-67) Target Range: (14-49) at 2019-04-06 00:26:18.0
faith changed starterator analysis to SS at 2019-02-06 09:40:49.0
clcabrera changed synteny to EA2 phages have genes similar to this one in the same area at 2019-01-28 19:14:59.0
dcedwards changed the gene function to NKF at 2019-01-22 16:04:28.0
clcabrera changed the coding capacity to yes at 2019-01-19 06:44:35.0
clcabrera Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 06:14:36.0
clcabrera Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 06:14:36.0
clcabrera Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 06:14:36.0
clcabrera Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 06:14:36.0
clcabrera Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:14:36.0
clcabrera Added NCBI BLAST Evidence Accession: AUX83391 Query Range: (1-68) Target Range: (1-70) at 2019-01-19 06:14:36.0
clcabrera Added HHPRED Evidence Accession: PF13986.5 Description: DUF4224 ; Domain of unknown function (DUF4224) Query Range: (10-39) Target Range: (2-35) at 2019-01-19 06:14:36.0
clcabrera changed the gene function to Unknown at 2019-01-19 06:14:36.0
clcabrera changed note to DUF4224 at 2019-01-19 06:14:36.0

Gene Number: 54
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:26:46.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH70607 Query Range: (1-57) Target Range: (1-57) at 2019-04-06 00:26:46.0
dcedwards Added HHPRED Evidence Accession: PF05521.11 Description: Phage_H_T_join ; Phage head-tail joining protein Query Range: (4-33) Target Range: (62-91) at 2019-04-06 00:26:46.0
dcedwards Added HHPRED Evidence Accession: 2K4Y_A Description: FeoA-like protein; FeOA like protein, GFT NMR; NMR {Clostridium acetobutylicum} Query Range: (14-54) Target Range: (12-47) at 2019-04-06 00:26:46.0
faith changed starterator analysis to SS at 2019-02-06 09:41:13.0
clcabrera changed note to Highest probability it couldn’t be a NKF is a FeOA protein or a phage head joining protein according to HHpred. However probably it is in the 50 to 60% range and unlikely due to the area of gene. at 2019-01-28 19:12:12.0
clcabrera changed synteny to EA2 phages have genes around this area that are NKF at 2019-01-28 19:12:12.0
dcedwards changed the gene function to NKF at 2019-01-22 16:05:03.0
clcabrera changed the coding capacity to yes at 2019-01-19 06:44:59.0
clcabrera Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 06:36:13.0
clcabrera Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:36:13.0
clcabrera Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:36:13.0
clcabrera Added NCBI BLAST Evidence Accession: AUX83392 Query Range: (1-57) Target Range: (1-57) at 2019-01-19 06:36:13.0
clcabrera Added NCBI BLAST Evidence Accession: AXH70607 Query Range: (1-57) Target Range: (1-57) at 2019-01-19 06:36:13.0
clcabrera Added HHPRED Evidence Accession: 2K4Y_A Description: FeoA-like protein; FeOA like protein, GFT NMR; NMR {Clostridium acetobutylicum} Query Range: (14-54) Target Range: (12-47) at 2019-01-19 06:36:13.0
clcabrera Added HHPRED Evidence Accession: PF05521.10 Description: Phage_H_T_join ; Phage head-tail joining protein Query Range: (4-33) Target Range: (62-91) at 2019-01-19 06:36:13.0
clcabrera changed the gene function to Unknown at 2019-01-19 06:36:13.0

Gene Number: 55
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:27:11.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83393 Query Range: (1-55) Target Range: (1-55) at 2019-04-06 00:27:11.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48626 Query Range: (1-55) Target Range: (1-55) at 2019-04-06 00:27:11.0
dcedwards Added HHPRED Evidence Accession: PF03016.15 Description: Exostosin ; Exostosin family Query Range: (47-53) Target Range: (309-315) at 2019-04-06 00:27:11.0
faith changed starterator analysis to SS at 2019-02-06 09:41:41.0
clcabrera Added NCBI BLAST Evidence Accession: AUX83393 Query Range: (1-55) Target Range: (1-55) at 2019-01-28 19:06:27.0
clcabrera Added NCBI BLAST Evidence Accession: AXH48626 Query Range: (1-55) Target Range: (1-55) at 2019-01-28 19:06:27.0
clcabrera changed note to According to NCBI BLAST, gene is 100% or 98% identical to their hypothetical gene which isn’t in Finny’s region but this shows gene to have an unknown function at 2019-01-28 19:06:27.0
clcabrera changed synteny to EA2 phages contain NKF genes near end of genome at 2019-01-28 19:06:27.0
dcedwards changed the gene function to NKF at 2019-01-22 16:05:38.0
clcabrera Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 06:44:08.0
clcabrera Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 06:44:08.0
clcabrera Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:44:08.0
clcabrera Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 06:44:08.0
clcabrera Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:44:08.0
clcabrera Added NCBI BLAST Evidence Accession: AXH70608 Query Range: (1-55) Target Range: (1-55) at 2019-01-19 06:44:08.0
clcabrera Added HHPRED Evidence Accession: 5G04_S Description: ANAPHASE-PROMOTING COMPLEX SUBUNIT 1, ANAPHASE-PROMOTING; CELL CYCLE, PHOSPHORYLATION, MITOSIS, UBIQUITINATION; 4.0A {HOMO SAPIENS} Query Range: (4-24) Target Range: (56-76) at 2019-01-19 06:44:08.0
clcabrera changed the gene function to Unknown at 2019-01-19 06:44:08.0
clcabrera changed the coding capacity to yes at 2019-01-19 06:44:08.0

Gene Number: 56
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:27:35.0
dcedwards Removed NCBI BLAST Evidence Accession: AXH48627 Query Range: (1-241) Target Range: (1-241) at 2019-04-06 00:27:35.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX83394 Query Range: (1-241) Target Range: (1-241) at 2019-04-06 00:27:35.0
dcedwards Added HHPRED Evidence Accession: PF10979.8 Description: DUF2786 ; Protein of unknown function (DUF2786) Query Range: (4-42) Target Range: (1-39) at 2019-04-06 00:27:35.0
faith changed starterator analysis to SS at 2019-02-06 09:42:02.0
clcabrera changed synteny to EA2 phages have genes in similar areas that are NKF at 2019-01-28 19:02:03.0
dcedwards changed the gene function to NKF at 2019-01-22 16:05:58.0
clcabrera Added HHPRED Evidence Accession: PF10979.7 Description: DUF2786 ; Protein of unknown function (DUF2786) Query Range: (4-42) Target Range: (1-40) at 2019-01-19 06:57:17.0
clcabrera Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added Phages DB Evidence Phage Name: ColaCorta Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added Phages DB Evidence Phage Name: MCubed_Draft Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added Phages DB Evidence Phage Name: Finny_Draft Function: function unknown at 2019-01-19 06:56:40.0
clcabrera Added NCBI BLAST Evidence Accession: AXH70609 Query Range: (1-241) Target Range: (1-241) at 2019-01-19 06:56:40.0
clcabrera Added NCBI BLAST Evidence Accession: AXH48627 Query Range: (1-241) Target Range: (1-241) at 2019-01-19 06:56:40.0
clcabrera Added NCBI BLAST Evidence Accession: AUX83394 Query Range: (1-241) Target Range: (1-241) at 2019-01-19 06:56:40.0
clcabrera changed the gene function to Unknown at 2019-01-19 06:56:40.0
clcabrera changed note to DUF2786 at 2019-01-19 06:56:40.0
clcabrera changed the coding capacity to yes at 2019-01-19 06:56:40.0

Gene Number: 57
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:28:11.0
dcedwards Added NCBI BLAST Evidence Accession: AUX83395 Query Range: (1-60) Target Range: (1-60) at 2019-04-06 00:28:11.0
dcedwards Added HHPRED Evidence Accession: cd15637 Description: PHD_dPYGO; PHD finger found in Drosophila melanogaster protein pygopus (dPYGO) and similar proteins. Query Range: (18-53) Target Range: (18-54) at 2019-04-06 00:28:11.0
faith changed the coding capacity to yes at 2019-02-06 09:42:35.0
faith changed starterator analysis to SS at 2019-02-06 09:42:35.0
dcedwards changed the gene function to NKF at 2019-01-22 16:06:32.0
hazemurphy Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-01-19 05:42:35.0
hazemurphy Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-01-19 05:42:35.0
hazemurphy changed the gene function to function unknown at 2019-01-19 05:42:35.0
hazemurphy changed note to It’s a hypothetical protein at 2019-01-19 05:42:35.0

Gene Number: 58
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:28:28.0
dcedwards Added HHPRED Evidence Accession: PF09954.9 Description: DUF2188 ; Uncharacterized protein conserved in bacteria (DUF2188) Query Range: (26-51) Target Range: (25-48) at 2019-04-06 00:28:28.0
faith changed the coding capacity to yes at 2019-02-06 09:43:09.0
faith changed starterator analysis to SS at 2019-02-06 09:43:09.0
kayla3498 changed synteny to Gene 58 has no known function in genomes of sub-cluster EA2 that have gene 58 present. Surrounding genes, 57 and 59, have no known function as well. Gene 58 is the same size in genomes that have gene 58 present. at 2019-01-27 17:18:48.0
dcedwards changed the gene function to NKF at 2019-01-22 16:10:55.0
hazemurphy Added NCBI BLAST Evidence Accession: AUX83396 Query Range: (1-60) Target Range: (1-60) at 2019-01-19 06:10:00.0
hazemurphy changed the gene function to Hypothetical protein at 2019-01-19 06:10:00.0
hazemurphy changed note to Hypothetical protein unknown function at 2019-01-19 06:10:00.0

Gene Number: 59
dcedwards Added Phages DB Evidence Phage Name: Andromedas Function: function unknown at 2019-04-06 00:28:48.0
dcedwards Added HHPRED Evidence Accession: d2nn6h3 Description: d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Query Range: (26-71) Target Range: (29-93) at 2019-04-06 00:28:48.0
faith changed the coding capacity to yes at 2019-02-06 09:43:58.0
faith changed starterator analysis to SS at 2019-02-06 09:43:58.0
kayla3498 changed synteny to Gene 59 has no known function in genomes of EA2 that have 59 present. Surrounding genes, 58 and 59, have no known function as well. Gene 59 is the same size in genomes that have gene present. at 2019-01-27 17:16:31.0
dcedwards changed the gene function to NKF at 2019-01-22 16:11:11.0
hazemurphy Added NCBI BLAST Evidence Accession: AUX83397 Query Range: (1-114) Target Range: (1-114) at 2019-01-19 06:14:02.0
hazemurphy changed the gene function to Hypothetical protein at 2019-01-19 06:14:02.0
hazemurphy changed note to Hypothetical protein unknown function at 2019-01-19 06:14:02.0

Gene Number: 60
dcedwards Added Phages DB Evidence Phage Name: Sansa Function: function unknown at 2019-04-06 00:29:07.0
dcedwards Added HHPRED Evidence Accession: 3H2Y_A Description: GTPase family protein; GTP-binding protein YqeH, possibly involved; HET: DGI; 1.8A {Bacillus anthracis str.} Query Range: (1-11) Target Range: (1-11) at 2019-04-06 00:29:07.0
faith changed the coding capacity to no at 2019-02-06 09:45:04.0
faith changed starterator analysis to SS at 2019-02-06 09:45:04.0
kayla3498 changed synteny to Gene 60 has no known function in genomes of EA2 that have 60 present. The surrounding genes, 59 and 61, have no known functions as well. Gene 60 is not the same size in all of the genomes of this Sub cluster that have gene 60 present. at 2019-01-27 17:11:06.0
dcedwards changed the gene function to NKF at 2019-01-22 16:11:25.0
hazemurphy Added NCBI BLAST Evidence Accession: AXH48631 Query Range: (1-61) Target Range: (1-61) at 2019-01-19 06:05:26.0
hazemurphy changed the gene function to Hypothetical protein at 2019-01-19 06:05:26.0
hazemurphy changed note to Hypothetical protein function unknown at 2019-01-19 06:05:26.0

Gene Number: 61
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:29:32.0
dcedwards Added HHPRED Evidence Accession: PF07361.11 Description: Cytochrom_B562 ; Cytochrome b562 Query Range: (19-96) Target Range: (21-99) at 2019-04-06 00:29:32.0
faith changed the coding capacity to yes at 2019-02-06 09:47:17.0
faith changed starterator analysis to SS at 2019-02-06 09:47:17.0
kayla3498 changed synteny to Gene 61 has no known function in genomes of EA2 that have 61 present. The surrounding genes, 60 and 62, have no known function as well. Gene 61 is the same size in the genomes of EA2 that have this gene present. at 2019-01-27 17:01:44.0
dcedwards changed the gene function to NKF at 2019-01-22 16:11:38.0
kayla3498 Added NCBI BLAST Evidence Accession: AUX83399 Query Range: (1-163) Target Range: (10-172) at 2019-01-19 09:37:50.0
kayla3498 changed the gene function to Hypothetical Protein at 2019-01-19 09:37:50.0
kayla3498 changed note to It looks like the same gene as ELERI_61 but has different start and stop base pairs. at 2019-01-19 09:37:50.0

Gene Number: 62
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:29:53.0
dcedwards Added HHPRED Evidence Accession: 3AH5_A Description: Thymidylate synthase thyX (E.C.2.1.1.148); Helicobacter pylori, ThyX, FAD, dUMP; HET: UMP, FAD, SO4; 2.5A {Helicobacter pylori} Query Range: (26-43) Target Range: (141-158) at 2019-04-06 00:29:53.0
faith changed the coding capacity to yes at 2019-02-06 09:49:24.0
faith changed starterator analysis to SS at 2019-02-06 09:49:24.0
kayla3498 changed synteny to Gene 62 has no known function in genomes of EA2 that have 62 present. The surrounding genes, 61 and 63, have no known function as well. Gene 62 is the same size in all of the genomes. at 2019-01-27 16:59:45.0
kayla3498 changed synteny to Gene 62 has no known function in genomes of EA2 that have 62 present. The surrounding genes, 61 and 63, have no known function as well. at 2019-01-27 16:57:11.0
dcedwards changed the gene function to NKF at 2019-01-22 16:11:55.0
kayla3498 Added NCBI BLAST Evidence Accession: AUX83400 Query Range: (1-49) Target Range: (1-49) at 2019-01-19 09:43:05.0
kayla3498 changed the gene function to Hypothetical Protein at 2019-01-19 09:43:05.0
kayla3498 changed note to The gene sequence looks the same as ELERI_62 but have different start and stop base pairs. at 2019-01-19 09:43:05.0

Gene Number: 63
dcedwards Added Phages DB Evidence Phage Name: Eleri Function: function unknown at 2019-04-06 00:30:18.0
dcedwards Added HHPRED Evidence Accession: cd14122 Description: STKc_VRK1; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 1. Query Range: (36-83) Target Range: (251-298) at 2019-04-06 00:30:18.0
faith changed the coding capacity to yes at 2019-02-06 09:50:18.0
faith changed starterator analysis to SS at 2019-02-06 09:50:18.0
kayla3498 changed note to The gene sequence looks like ELERI_63 but has different start and stop base pairs. Last Gene. at 2019-01-27 16:50:11.0
kayla3498 changed synteny to Gene 63 has no known function in genomes of EA2 that have 63 present. Gene 63 follows gene 62 which has no known function as well. Gene 63 is same size in genomes. Last gene. at 2019-01-27 16:50:11.0
dcedwards changed the gene function to NKF at 2019-01-22 16:12:09.0
kayla3498 Added NCBI BLAST Evidence Accession: AUX83401 Query Range: (1-103) Target Range: (1-103) at 2019-01-19 09:47:32.0
kayla3498 changed the gene function to Hypothetical Protein at 2019-01-19 09:47:32.0
kayla3498 changed note to The gene sequence looks like ELERI_63 but has different start and stop base pairs. at 2019-01-19 09:47:32.0