Phage Name: Tripl3t

Gene Number: 1
bristerpostma changed starterator analysis to SS at 2019-02-05 09:09:25.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX81748 Query Range: (1-96) Target Range: (1-96) at 2019-02-05 08:52:06.0
dcedwards Added HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (6-78) Target Range: (51-130) at 2019-02-05 08:52:06.0
dcedwards Added Phages DB Evidence Phage Name: Smeagol Function: HNH endonuclease at 2019-02-05 08:49:23.0
dcedwards Added CDD Evidence Accession: cd00085 Query Range: (18-70) Target Range: (1-57) at 2019-02-05 08:48:28.0
tiffanylujan changed the coding capacity to yes at 2019-02-05 06:16:41.0
tiffanylujan Added CDD Evidence Accession: cd00085 Query Range: (18-70) Target Range: (1-57) at 2018-11-30 10:20:29.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVO22316 Query Range: (1-98) Target Range: (1-98) at 2018-11-30 10:20:29.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX81748 Query Range: (1-96) Target Range: (1-96) at 2018-11-30 10:20:29.0
tiffanylujan changed synteny to That HNH endonuclease is involved in packaging DNA and is often seen at the beginning of a genome. at 2018-11-30 10:19:59.0
dcedwards Added Phages DB Evidence Phage Name: Smeagol Function: HNH endonuclease at 2018-10-25 05:55:59.0
dcedwards Added Phages DB Evidence Phage Name: Zephyr Function: HNH endonuclease at 2018-10-25 05:55:59.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: HNH endonuclease at 2018-10-25 05:55:59.0
dcedwards Added HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (6-78) Target Range: (51-130) at 2018-10-25 05:53:25.0
dcedwards changed the gene function to HNH endonuclease at 2018-10-25 05:53:25.0
dcedwards changed synteny to That HNH endonuclease is in volved in packaging DNA and is often seen at the beginning of a genome. at 2018-10-25 05:53:25.0
dcedwards changed the start site to 598 at 2018-10-25 05:47:04.0

Gene Number: 2
bristerpostma changed starterator analysis to SS at 2019-02-05 09:09:15.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-05 08:52:25.0
dcedwards Added HHPRED Evidence Accession: PF03852.14 Description: Vsr ; DNA mismatch endonuclease Vsr Query Range: (6-19) Target Range: (59-72) at 2019-02-05 08:52:25.0
dcedwards changed the gene function to NKF at 2019-02-03 06:12:05.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 12:40:53.0
rheavensandoval Added NCBI BLAST Evidence Accession: AUX81747 Query Range: (1-62) Target Range: (1-62) at 2019-01-17 06:36:22.0
rheavensandoval changed synteny to at 2019-01-17 06:36:22.0
cmcclaran Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2018-11-08 05:17:00.0
cmcclaran changed the gene function to Hypothetical protein at 2018-11-08 05:17:00.0
cmcclaran changed the coding capacity to yes at 2018-11-08 05:17:00.0
cmcclaran changed synteny to potential apoptosis inhibitor at 2018-11-08 05:17:00.0

Gene Number: 3
dcedwards changed synteny to Near the beginning of the genome, and contains a helix-turn-helix domain for dimerization of the terminase complex at 2019-02-07 19:28:27.0
dcedwards changed synteny to Near the beginning of the genome, and contains a helix-turn-helix domain for dimerization. at 2019-02-07 19:26:29.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:09:10.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009198963 Query Range: (1-146) Target Range: (1-146) at 2019-02-05 08:53:26.0
dcedwards Removed NCBI BLAST Evidence Accession: APQ42016 Query Range: (1-146) Target Range: (1-146) at 2019-02-05 08:53:26.0
dcedwards Removed NCBI BLAST Evidence Accession: AOZ64043 Query Range: (1-146) Target Range: (1-146) at 2019-02-05 08:53:26.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009283250 Query Range: (5-146) Target Range: (3-144) at 2019-02-05 08:53:26.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: terminase small subunit at 2019-02-05 08:53:01.0
dcedwards Added HHPRED Evidence Accession: PF05119.11 Description: Terminase_4 ; Phage terminase, small subunit Query Range: (48-120) Target Range: (1-97) at 2019-02-05 08:53:01.0
leahdowell Added Phages DB Evidence Phage Name: ILeeKay Function: terminase small subunit at 2018-11-30 09:20:46.0
leahdowell Added Phages DB Evidence Phage Name: Arlo Function: terminase, small subunit at 2018-11-30 09:20:46.0
leahdowell Added Phages DB Evidence Phage Name: Acme Function: terminase small subunit at 2018-11-30 09:20:46.0
leahdowell Added NCBI BLAST Evidence Accession: AOZ64043 Query Range: (1-146) Target Range: (1-146) at 2018-11-30 09:20:46.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009283250 Query Range: (5-146) Target Range: (3-144) at 2018-11-30 09:20:46.0
leahdowell Removed NCBI BLAST Evidence Accession: NP_075269 Query Range: (1-146) Target Range: (1-146) at 2018-11-30 09:20:46.0
leahdowell Removed NCBI BLAST Evidence Accession: AEK09298 Query Range: (1-146) Target Range: (1-146) at 2018-11-30 09:20:46.0
jburch9 changed the gene function to terminase, small subunit at 2018-11-08 05:08:03.0
jburch9 changed note to Initiates packaging of the viral genome. at 2018-11-08 05:08:03.0
jburch9 changed the coding capacity to yes at 2018-11-08 05:08:03.0
jburch9 changed synteny to Terminase 4/subunit at 2018-11-08 05:08:03.0
jburch9 Added NCBI BLAST Evidence Accession: NP_075269 Query Range: (1-146) Target Range: (1-146) at 2018-11-08 05:03:40.0
jburch9 Added NCBI BLAST Evidence Accession: AEK09298 Query Range: (1-146) Target Range: (1-146) at 2018-11-08 05:03:40.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009043787 Query Range: (1-146) Target Range: (1-146) at 2018-11-08 05:03:40.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009198963 Query Range: (1-146) Target Range: (1-146) at 2018-11-08 05:03:40.0
jburch9 Added NCBI BLAST Evidence Accession: APQ42016 Query Range: (1-146) Target Range: (1-146) at 2018-11-08 05:03:40.0
dcedwards Added HHPRED Evidence Accession: PF05119.11 Description: Terminase_4 ; Phage terminase, small subunit Query Range: (48-115) Target Range: (1-92) at 2018-10-18 06:11:43.0

Gene Number: 4
bristerpostma changed starterator analysis to SS at 2019-02-05 09:09:03.0
dcedwards Added Phages DB Evidence Phage Name: Pari Function: function unknown at 2019-02-05 08:53:51.0
dcedwards Added HHPRED Evidence Accession: 4LQE_A Description: MepB; Endonuclease, DNA BINDING PROTEIN; 2.1A {Staphylococcus aureus} Query Range: (83-139) Target Range: (46-115) at 2019-02-05 08:53:51.0
dcedwards changed the gene function to NKF at 2019-02-05 08:47:22.0
dcedwards changed note to at 2019-02-05 08:47:22.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:27:25.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009197583 Query Range: (1-139) Target Range: (1-139) at 2018-11-30 16:27:25.0
bristerpostma Added HHPRED Evidence Accession: 4LQE_A Description: MepB; Endonuclease, DNA BINDING PROTEIN; 2.1A {Staphylococcus aureus} Query Range: (83-139) Target Range: (46-115) at 2018-11-30 16:27:25.0
bristerpostma Removed HHPRED Evidence Accession: PF13953.5 Description: PapC_C ; PapC C-terminal domain Query Range: (3-38) Target Range: (2-35) at 2018-11-30 16:27:25.0
bristerpostma changed the gene function to MepB Endonuclease at 2018-11-30 16:27:25.0
bristerpostma changed note to MepB; Endonuclease, DNA BINDING PROTEIN; 2.1A {Staphylococcus aureus} at 2018-11-30 16:27:25.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:27:25.0
jowhites Added HHPRED Evidence Accession: PF13953.5 Description: PapC_C ; PapC C-terminal domain Query Range: (3-38) Target Range: (2-35) at 2018-10-25 06:09:52.0

Gene Number: 5
dcedwards changed synteny to That HNH endonuclease is involved in packaging DNA and is often seen at the beginning of a genome. at 2019-02-07 19:31:25.0
dcedwards Added Phages DB Evidence Phage Name: Faja Function: HNH endonuclease at 2019-02-05 09:29:10.0
dcedwards Removed Phages DB Evidence Phage Name: Alsfro Function: function unknown at 2019-02-05 09:29:10.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:58.0
dcedwards Added Phages DB Evidence Phage Name: Alsfro Function: function unknown at 2019-02-05 08:55:12.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008409736 Query Range: (1-159) Target Range: (1-159) at 2019-02-05 08:55:12.0
dcedwards Added HHPRED Evidence Accession: 1U3E_M Description: PROTEIN/DNA Complex; HNH catalytic motif, Helix-turn-helix DNA; HET: EDO; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3, d.285.1.1 Query Range: (35-146) Target Range: (35-145) at 2019-02-05 08:55:12.0
dcedwards changed the gene function to HNH endonuclease at 2019-02-05 08:55:12.0
dcedwards changed synteny to at 2019-02-05 08:51:49.0
dcedwards changed note to at 2019-02-05 08:51:43.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:00:41.0
faith changed the gene function to NKF at 2019-02-05 06:16:46.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 05:00:24.0
faith changed the gene function to Unknown at 2018-12-01 05:00:24.0
faith changed note to Zinc-binding loops region of homing endonuclease, according to HHpred.
This domain [PMID: 10581547] is the short zinc-binding loops region of a number of much longer chain homing endonucleases. Such loops are probably stabilised by the zinc and may be viewed as small but separate domains. The common structural feature of these domains is that at least three zinc ligands lie very close to each other in the sequence and are not incorporated into regular secondary structural elements. The biological roles played by these small zinc-binding domains are presently unknown [PMID: 12527760]. at 2018-12-01 05:00:24.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 05:00:24.0
parkeramp1 changed synteny to This domain [PMID: 10581547] is the short zinc-binding loops region of a number of much longer chain homing endonucleases. Such loops are probably stabilised by the zinc and may be viewed as small but separate domains. The common structural feature of these domains is that at least three zinc ligands lie very close to each other in the sequence and are not incorporated into regular secondary structural elements. The biological roles played by these small zinc-binding domains are presently unknown [PMID: 12527760]. at 2018-10-25 06:17:21.0
parkeramp1 Added HHPRED Evidence Accession: PF05551.10 Description: zf-His_Me_endon ; Zinc-binding loop region of homing endonuclease Query Range: (26-96) Target Range: (1-79) at 2018-10-25 06:08:53.0

Gene Number: 6
dcedwards Added Phages DB Evidence Phage Name: CactusRose Function: tail protein at 2019-02-05 09:32:47.0
dcedwards Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (123-200) Target Range: (1-55) at 2019-02-05 09:32:47.0
dcedwards changed synteny to Cluster A1 phages can have a tail upstream of the tape measure protein at 2019-02-05 09:29:44.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:51.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:02:18.0
tiffanylujan changed synteny to Mediates adsorption and infections of host which is typically in the beginning part of the genome at 2018-12-01 12:10:42.0
tiffanylujan Added Phages DB Evidence Phage Name: Maroc7 Function: Minor tail protein at 2018-11-30 10:49:58.0
tiffanylujan Added NCBI BLAST Evidence Accession: AOZ64045 Query Range: (1-356) Target Range: (1-356) at 2018-11-30 10:49:58.0
tiffanylujan changed the gene function to major tail protein at 2018-11-30 10:49:58.0
tiffanylujan changed synteny to Mediates adsorption and infections of host at 2018-11-30 10:49:58.0
jagraham Added Phages DB Evidence Phage Name: CactusRose Function: tail protein at 2018-11-08 04:51:21.0
jagraham changed synteny to The adsorption and infection of bacteriophage P2 is mediated by tail fibres and tail spikes. The tail spikes on the tail baseplate are used to irreversibly adsorb to the host cells. Recently, a P2 phage tail-spike protein, gpV, was purified and it was shown that a C-terminal domain, Ser87–Leu211, is sufficient for the binding of gpV to host Escherichia coli membranes [Kageyama et al. (2009 ?), Biochemistry, 48, 10129–10135]. In this paper, the crystal structure of the C-terminal domain of P2 gpV is reported. The structure is a triangular pyramid and looks like a spearhead composed of an intertwined ?-­sheet, a triple ?-helix and a metal-binding region containing iron, calcium and chloride ions. at 2018-10-25 06:17:21.0
jagraham Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (123-200) Target Range: (1-55) at 2018-10-25 06:12:29.0

Gene Number: 7
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: function unknown at 2019-02-05 09:52:37.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:45.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:29:35.0
faith changed the gene function to NKF at 2019-02-05 06:17:02.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 12:41:09.0
rheavensandoval changed the gene function to hypothetical protein at 2019-01-17 07:18:19.0
rheavensandoval changed note to at 2019-01-17 07:18:19.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009032052 Query Range: (1-231) Target Range: (1-231) at 2019-01-17 07:17:22.0
rheavensandoval changed the gene function to at 2019-01-17 07:17:22.0
rheavensandoval changed synteny to at 2019-01-17 07:17:22.0
katherinegrace Removed Phages DB Evidence Phage Name: Makemake Function: function unknown at 2018-11-01 06:06:13.0
katherinegrace changed note to hypothetical protein at 2018-11-01 06:06:13.0
katherinegrace Added Phages DB Evidence Phage Name: Lamina13 Function: function unknown at 2018-11-01 05:57:00.0
katherinegrace Added Phages DB Evidence Phage Name: Makemake Function: function unknown at 2018-11-01 05:57:00.0
katherinegrace changed the gene function to PapR protein at 2018-10-25 06:12:34.0
katherinegrace changed synteny to Cell signalling, governs basic activities and actions of the cell. at 2018-10-25 06:12:34.0

Gene Number: 8
dcedwards changed note to at 2019-02-05 09:53:48.0
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: function unknown at 2019-02-05 09:53:01.0
dcedwards Added NCBI BLAST Evidence Accession: AVO22323 Query Range: (1-86) Target Range: (1-86) at 2019-02-05 09:53:01.0
dcedwards Added HHPRED Evidence Accession: PF06613.10 Description: KorB_C ; KorB C-terminal beta-barrel domain Query Range: (49-83) Target Range: (26-59) at 2019-02-05 09:53:01.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:39.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:29:59.0
faith changed the gene function to NKF at 2019-02-05 06:17:14.0
leahdowell changed the gene function to Unknown at 2018-11-30 09:52:35.0
tivy changed note to I think that the Transglutaminase helps to prevent the proteins from being cut up. But it does not appear to be a part of the bacteria phage. at 2018-11-01 06:07:29.0
tivy changed synteny to at 2018-11-01 06:07:29.0
tivy changed synteny to i think that the Transglutaminase helps to prevent the proteins from being cut up. at 2018-10-25 06:17:22.0

Gene Number: 9
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-02-05 09:53:27.0
dcedwards Added HHPRED Evidence Accession: 3SOH_B Description: Flagellar motor switch protein FliM; protein-protein complex, alpha/beta, MOTOR PROTEIN; 3.5A {Thermotoga maritima} Query Range: (14-83) Target Range: (5-67) at 2019-02-05 09:53:27.0
dcedwards changed note to at 2019-02-05 09:53:27.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:31.0
faith changed the gene function to NKF at 2019-02-05 06:17:31.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:29:46.0
bristerpostma Added Phages DB Evidence Phage Name: Zeeculate Function: function unknown at 2018-11-30 16:29:46.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_001491577 Query Range: (1-85) Target Range: (1-85) at 2018-11-30 16:29:46.0
bristerpostma Added HHPRED Evidence Accession: 3SOH_B Description: Flagellar motor switch protein FliM; protein-protein complex, alpha/beta, MOTOR PROTEIN; 3.5A {Thermotoga maritima} Query Range: (14-83) Target Range: (5-67) at 2018-11-30 16:29:46.0
bristerpostma Added HHPRED Evidence Accession: 4QRM_F Description: Flagellar motor switch protein FliM; Flagellar rotor proteins, PROTEIN BINDING; 4.315A {Thermotoga maritima} Query Range: (13-83) Target Range: (4-67) at 2018-11-30 16:29:46.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:29:46.0
bristerpostma changed note to Function unknown. Possible Flagellar motor switch protein FliM at 2018-11-30 16:29:46.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:29:46.0

Gene Number: 10
dcedwards changed note to at 2019-02-05 09:56:41.0
dcedwards changed synteny to Necessary for lysis of cell which is typically in the begging half of the genome. Next to lysin A gene. at 2019-02-05 09:56:41.0
dcedwards changed the gene function to lysin A at 2019-02-05 09:55:53.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: lysin A at 2019-02-05 09:55:39.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075275 Query Range: (1-477) Target Range: (1-477) at 2019-02-05 09:55:39.0
dcedwards Added HHPRED Evidence Accession: 4OK7_B Description: Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} Query Range: (189-343) Target Range: (27-222) at 2019-02-05 09:55:39.0
dcedwards changed note to Endolysin are used to lyse the cell wall so that virions can leave the cell after infection, this is likely a chitinase, specifically. at 2019-02-05 09:55:39.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:23.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:30:33.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 05:06:43.0
faith Added HHPRED Evidence Accession: 4OK7_B Description: Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} Query Range: (189-343) Target Range: (27-222) at 2018-12-01 05:06:43.0
faith Added HHPRED Evidence Accession: 4IJ4_A Description: Chitinase A (E.C.3.2.1.14); Chitinase, Hydrolase, Carbohydrate; HET: NAG, EDO; 1.58A {Bryum coronatum} Query Range: (143-343) Target Range: (4-195) at 2018-12-01 05:06:43.0
faith Added HHPRED Evidence Accession: 2CJL_B Description: SECRETED CHITINASE (E.C.3.2.1.14); HYDROLASE, PLANT ENZYMES; 1.5A {STREPTOMYCES COELICOLOR} Query Range: (197-343) Target Range: (20-194) at 2018-12-01 05:06:43.0
faith Added HHPRED Evidence Accession: 3WH1_A Description: Chitinase A (E.C.3.2.1.14); Chitinase, Hydrolase, Carbohydrate; HET: EDO, NAG; 1.0A {Bryum coronatum} Query Range: (193-343) Target Range: (25-196) at 2018-12-01 05:06:43.0
faith changed the gene function to Endolysin at 2018-12-01 05:06:43.0
faith changed note to Endolysin are used to lyse the cell wall so that virions can leave the cell after infection, this is likely a chitinase, specifically. According to HHpred it has a 99.8% of being a chintinase/endolysin, both of which would serve the same function. at 2018-12-01 05:06:43.0
faith changed synteny to Chitinase endolysin at 2018-12-01 05:06:43.0
travisbrown changed note to endolysin are used to lyse the cell wall so that virions can leave the cell after infection at 2018-10-25 06:15:23.0
travisbrown changed synteny to it is a Putative endolysin at 2018-10-25 06:15:23.0

Gene Number: 11
dcedwards changed note to at 2019-02-05 09:56:25.0
dcedwards changed synteny to Necessary for lysis of cell which is typically in the begging half of the genome. Next to lysin A gene. at 2019-02-05 09:56:25.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:14.0
tiffanylujan Removed Phages DB Evidence Phage Name: DD5 Function: lysin B at 2018-12-01 12:11:33.0
tiffanylujan changed synteny to Necessary for lysis of cell which is typically in the begging half of the genome at 2018-12-01 12:11:33.0
tiffanylujan Added Phages DB Evidence Phage Name: DD5 Function: lysin B at 2018-11-30 10:54:26.0
tiffanylujan Removed Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 10:54:26.0
tiffanylujan changed the gene function to lysin B at 2018-11-30 10:54:26.0
tiffanylujan changed synteny to Necessary for lysis of cell at 2018-11-30 10:54:26.0
cole259 Added NCBI BLAST Evidence Accession: AJA43585 Query Range: (1-322) Target Range: (1-322) at 2018-11-08 05:10:04.0
cole259 Added Phages DB Evidence Phage Name: Thor Function: lysin B at 2018-11-08 05:08:29.0
cole259 changed synteny to causes lysis of cell at 2018-11-08 05:08:29.0
cole259 changed the coding capacity to yes at 2018-11-08 05:02:06.0
cole259 changed the gene function to cell adhesion at 2018-11-08 05:01:50.0
cole259 changed note to alpha-beta sandwich used to aid in cell adhesion at 2018-11-08 05:01:50.0
cole259 Added HHPRED Evidence Accession: 3HC7_A Description: Gene 12 protein; alpha/beta sandwich, CELL ADHESION; 2.0A {Mycobacterium phage D29} Query Range: (79-320) Target Range: (2-253) at 2018-11-01 06:20:04.0
cole259 Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-01 05:59:54.0

Gene Number: 12
dcedwards Added Phages DB Evidence Phage Name: Seabiscuit Function: terminase large subunit at 2019-02-05 10:05:39.0
dcedwards Added HHPRED Evidence Accession: PF03354.14 Description: Terminase_1 ; Phage Terminase Query Range: (61-546) Target Range: (1-465) at 2019-02-05 10:05:39.0
dcedwards changed the gene function to terminase, large subunit at 2019-02-05 09:57:14.0
dcedwards changed synteny to terminase, small subunit located upstream. at 2019-02-05 09:57:14.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:07.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:31:35.0
rheavensandoval Added Phages DB Evidence Phage Name: Seabiscuit Function: terminase large subunit at 2019-01-17 07:44:18.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009031199 Query Range: (1-562) Target Range: (1-562) at 2019-01-17 07:44:18.0
rheavensandoval Added HHPRED Evidence Accession: PF03354.14 Description: Terminase_1 ; Phage Terminase Query Range: (61-546) Target Range: (1-465) at 2019-01-17 07:44:18.0
rheavensandoval Removed HHPRED Evidence Accession: 4IDH_A Description: Gene 2 protein; DNA packaging, terminase, ATPase, nuclease; 1.69A {Shigella phage Sf6} Query Range: (50-542) Target Range: (15-471) at 2019-01-17 07:44:18.0
rheavensandoval changed the gene function to terminase at 2019-01-17 07:44:18.0
dyuon3 changed the gene function to terminase, large subunit at 2018-10-25 06:18:29.0
dyuon3 Added HHPRED Evidence Accession: 4IDH_A Description: Gene 2 protein; DNA packaging, terminase, ATPase, nuclease; 1.69A {Shigella phage Sf6} Query Range: (50-542) Target Range: (15-471) at 2018-10-25 06:17:29.0
dyuon3 changed the start site to 7661 at 2018-10-25 06:08:27.0

Gene Number: 13
dcedwards changed synteny to Molecular motor that translocates DNA to the procapsid interior. Gene located at the beginning of the set of structural genes. Only one portal gene annotated. at 2019-02-07 19:32:09.0
dcedwards Removed NCBI BLAST Evidence Accession: ATN89353 Query Range: (1-480) Target Range: (1-480) at 2019-02-05 10:06:02.0
dcedwards Added HHPRED Evidence Accession: 5A20_B Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE; 7.6A {BACILLUS PHAGE SPP1} Query Range: (6-460) Target Range: (32-491) at 2019-02-05 10:06:02.0
dcedwards Added CDD Evidence Accession: pfam05133 Query Range: (54-440) Target Range: (47-415) at 2019-02-05 09:59:09.0
dcedwards changed synteny to Molecular motor that translocates DNA to the procapsid interior. Gene located at the beginning pf the set of structural genes. Only one portal gene annotated. at 2019-02-05 09:58:58.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:08:00.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:09:24.0
leahdowell changed synteny to molecular motor that translocates DNA to the procapsid interior at 2018-11-30 09:56:32.0
jrjones changed the gene function to portal protein at 2018-10-25 06:15:55.0
jrjones changed synteny to is essential component of DNA packaging at 2018-10-25 06:15:27.0
jrjones Added HHPRED Evidence Accession: PF05133.13 Description: Phage_prot_Gp6 ; Phage portal protein, SPP1 Gp6-like Query Range: (10-436) Target Range: (3-414) at 2018-10-25 06:06:11.0
jrjones changed the gene function to phage portal at 2018-10-25 06:06:11.0
jrjones changed the start site to 9346 at 2018-10-25 06:03:08.0
jrjones changed the start site to 9346 at 2018-10-25 06:02:35.0

Gene Number: 14
dcedwards changed synteny to This protein is adjacent and before the capsid proteins at 2019-02-07 19:32:46.0
dcedwards changed the gene function to capsid maturation protease at 2019-02-05 10:29:58.0
dcedwards Added HHPRED Evidence Accession: PF04233.13 Description: Phage_Mu_F ; Phage Mu protein F like protein Query Range: (113-216) Target Range: (34-107) at 2019-02-05 10:29:34.0
dcedwards changed the gene function to capsid at 2019-02-05 10:29:34.0
dcedwards changed synteny to This protein is adjacent to other structural proteins. at 2019-02-05 10:29:34.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:54.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:31:11.0
bristerpostma Added Phages DB Evidence Phage Name: Seabiscuit Function: capsid maturation protease at 2018-11-30 16:31:11.0
bristerpostma Added Phages DB Evidence Phage Name: MrGordo Function: capsid maturation protease at 2018-11-30 16:31:11.0
bristerpostma Added Phages DB Evidence Phage Name: McGuire Function: capsid maturation protease at 2018-11-30 16:31:11.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:31:11.0
mattm113 changed synteny to This protein is adjacent to other head proteins. at 2018-10-25 06:13:37.0
mattm113 Added HHPRED Evidence Accession: PF04233.13 Description: Phage_Mu_F ; Phage Mu protein F like protein Query Range: (113-216) Target Range: (34-107) at 2018-10-25 06:12:08.0
mattm113 Added HHPRED Evidence Accession: PF06152.10 Description: Phage_min_cap2 ; Phage minor capsid protein 2 Query Range: (112-225) Target Range: (199-298) at 2018-10-25 06:12:08.0
mattm113 changed the gene function to MuF-like minor capsid protein at 2018-10-25 06:12:08.0
mattm113 changed the start site to 10785 at 2018-10-25 06:02:29.0

Gene Number: 15
dcedwards changed synteny to Between the capsid maturation protease and the major capsid protein. at 2019-02-05 10:52:30.0
dcedwards changed the gene function to scaffolding protein at 2019-02-05 10:52:16.0
dcedwards changed note to at 2019-02-05 10:52:16.0
dcedwards changed synteny to Between the capsid maturation protease and the major capsid. at 2019-02-05 10:52:16.0
dcedwards Added Phages DB Evidence Phage Name: Alvin Function: scaffolding protein at 2019-02-05 10:51:08.0
dcedwards Added HHPRED Evidence Accession: PF14265.5 Description: DUF4355 ; Domain of unknown function (DUF4355) Query Range: (47-133) Target Range: (18-114) at 2019-02-05 10:51:08.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001491665 Query Range: (1-170) Target Range: (1-170) at 2019-02-05 10:30:24.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:42.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:34:08.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 05:25:08.0
faith Added Phages DB Evidence Phage Name: Wheeler Function: scaffolding protein at 2018-12-01 05:25:08.0
faith Added Phages DB Evidence Phage Name: TheloniousMonk Function: scaffolding protein at 2018-12-01 05:25:08.0
faith Added Phages DB Evidence Phage Name: Smairt Function: scaffolding protein at 2018-12-01 05:25:08.0
faith Added NCBI BLAST Evidence Accession: YP_008058907 Query Range: (1-170) Target Range: (1-170) at 2018-12-01 05:25:08.0
faith Added NCBI BLAST Evidence Accession: YP_001491665 Query Range: (1-170) Target Range: (1-170) at 2018-12-01 05:25:08.0
faith changed note to Likely a major capsid protein, which acts as the primary component of the capsid. at 2018-12-01 05:25:08.0
faith changed synteny to Major capsid protein at 2018-12-01 05:25:08.0
pcraft changed the gene function to major capsid protein at 2018-11-01 06:03:03.0
pcraft changed the gene function to Major head protein at 2018-10-25 06:17:14.0
pcraft changed synteny to This protein is around other head and capsid proteins. at 2018-10-25 06:17:14.0
pcraft changed the start site to 11724 at 2018-10-25 06:02:31.0

Gene Number: 16
dcedwards changed synteny to Located after the portal gene, but before the minor capsid gene at 2019-02-07 19:34:14.0
dcedwards Removed Phages DB Evidence Phage Name: Wheeler Function: major capsid protein at 2019-02-05 10:53:07.0
dcedwards Added CDD Evidence Accession: pfam05065 Query Range: (27-332) Target Range: (4-275) at 2019-02-05 10:53:07.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_008410794 Query Range: (1-338) Target Range: (1-338) at 2019-02-05 10:53:07.0
dcedwards Removed HHPRED Evidence Accession: 1OHG_E Description: MAJOR CAPSID PROTEIN; VIRUS, VIRUS COAT PROTEIN, VIRUS/VIRAL; 3.45A {BACTERIOPHAGE HK97} SCOP: d.183.1.1 Query Range: (13-336) Target Range: (1-282) at 2019-02-05 10:53:07.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:35.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:09:57.0
tiffanylujan Added Phages DB Evidence Phage Name: Wheeler Function: major capsid protein at 2018-12-01 12:13:09.0
tiffanylujan Removed Phages DB Evidence Phage Name: Treddle Function: major capsid protein at 2018-12-01 12:13:09.0
tiffanylujan Removed CDD Evidence Accession: pfam05065 Query Range: (27-332) Target Range: (4-275) at 2018-12-01 12:13:09.0
tiffanylujan Added HHPRED Evidence Accession: 1OHG_E Description: MAJOR CAPSID PROTEIN; VIRUS, VIRUS COAT PROTEIN, VIRUS/VIRAL; 3.45A {BACTERIOPHAGE HK97} SCOP: d.183.1.1 Query Range: (13-336) Target Range: (1-282) at 2018-12-01 12:13:09.0
tiffanylujan changed synteny to Protein that self associates to form structural component capsid which is typically in the first part of the genome at 2018-12-01 12:13:09.0
tiffanylujan changed synteny to Protein that self associates to form structural component capsid at 2018-11-30 11:01:52.0
tiffanylujan Added Phages DB Evidence Phage Name: Treddle Function: major capsid protein at 2018-11-30 10:58:20.0
tiffanylujan Added Phages DB Evidence Phage Name: Thor Function: major capsid protein at 2018-11-30 10:58:20.0
tiffanylujan Added CDD Evidence Accession: pfam05065 Query Range: (27-332) Target Range: (4-275) at 2018-11-30 10:58:20.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVJ49482 Query Range: (1-338) Target Range: (1-338) at 2018-11-30 10:58:20.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008410794 Query Range: (1-338) Target Range: (1-338) at 2018-11-30 10:58:20.0
haleyvanakenbdisd Added HHPRED Evidence Accession: 3JB5_B Description: major capsid protein; acne, bacteriophage, HK97-like, VIRUS; 3.7A {Propionibacterium phage PA6} Query Range: (21-338) Target Range: (6-309) at 2018-10-25 06:17:05.0
haleyvanakenbdisd changed the gene function to major capsid protein at 2018-10-25 06:17:05.0
haleyvanakenbdisd changed synteny to That the protein is in front of the tail end and it is in a similar place to other capsid proteins. at 2018-10-25 06:17:05.0

Gene Number: 17
dcedwards Added Phages DB Evidence Phage Name: Corvo Function: function unknown at 2019-02-05 10:57:20.0
dcedwards Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (50-114) Target Range: (1-60) at 2019-02-05 10:57:20.0
dcedwards changed the gene function to NKF at 2019-02-05 10:57:20.0
dcedwards changed synteny to at 2019-02-05 10:57:20.0
dcedwards Removed Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2019-02-05 10:53:53.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:30.0
slgoldberg Added HHPRED Evidence Accession: 3QC7_A Description: Head fiber protein; supercoiled triple repeating helix-turn-helix, VIRAL; 1.52A {Bacillus phage phi29} Query Range: (63-171) Target Range: (101-167) at 2018-11-08 04:54:34.0
slgoldberg changed the coding capacity to yes at 2018-11-08 04:52:41.0
slgoldberg changed synteny to The proteins that make up the head and tail connectors. at 2018-11-08 04:52:41.0
slgoldberg Added NCBI BLAST Evidence Accession: APQ41804 Query Range: (1-172) Target Range: (1-172) at 2018-11-08 04:50:42.0
slgoldberg Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-08 04:47:19.0
slgoldberg Added Phages DB Evidence Phage Name: Sibs6 Function: function unknown at 2018-11-08 04:47:19.0
slgoldberg changed synteny to The proteins that make up the head and tail. at 2018-11-08 04:47:19.0
slgoldberg Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (50-114) Target Range: (1-60) at 2018-10-25 06:17:07.0
slgoldberg changed the gene function to head-to-tail connector complex protein at 2018-10-25 06:17:07.0
slgoldberg changed the start site to 13342 at 2018-10-25 05:56:47.0

Gene Number: 18
dcedwards Added Phages DB Evidence Phage Name: Bircsak Function: head-to-tail connector protein at 2019-02-05 11:00:42.0
dcedwards Removed NCBI BLAST Evidence Accession: APQ42373 Query Range: (1-149) Target Range: (1-149) at 2019-02-05 11:00:42.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX81764 Query Range: (1-149) Target Range: (1-149) at 2019-02-05 11:00:42.0
dcedwards Added HHPRED Evidence Accession: cd08051 Description: gp6_gp15_like; Head-Tail Connector Proteins gp6 and gp15, and similar proteins. Members of this family include the proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. Query Range: (7-93) Target Range: (1-85) at 2019-02-05 11:00:42.0
dcedwards changed synteny to Has HHPRED alignment to crystal structure of HK97 gp6 at 2019-02-05 11:00:42.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:24.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:37:45.0
leahdowell changed the gene function to head-to-tail connector complex protein at 2018-11-30 09:58:55.0
leahdowell changed synteny to structural protein that connects the head to the tail at 2018-11-30 09:58:55.0
msmoore changed the gene function to head-to-tail connector protein at 2018-11-01 06:04:33.0
msmoore Added NCBI BLAST Evidence Accession: YP_009291256 Query Range: (1-149) Target Range: (1-149) at 2018-11-01 06:03:59.0
msmoore Added HHPRED Evidence Accession: PF09355.9 Description: Phage_Gp19 ; Phage protein Gp19/Gp15/Gp42 Query Range: (13-117) Target Range: (1-116) at 2018-11-01 05:59:45.0
msmoore changed the start site to 13860 at 2018-10-25 05:57:49.0

Gene Number: 19
dcedwards changed synteny to Located after major capsid protein gene and before the tape measure protein gene at 2019-02-07 19:35:15.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491669 Query Range: (1-105) Target Range: (16-120) at 2019-02-05 11:04:56.0
dcedwards Added Phages DB Evidence Phage Name: Arcanine Function: minor capsid protein at 2019-02-05 11:04:34.0
dcedwards Added HHPRED Evidence Accession: PF10665.8 Description: Minor_capsid_1 ; Minor capsid protein Query Range: (8-102) Target Range: (17-106) at 2019-02-05 11:04:34.0
dcedwards changed note to at 2019-02-05 11:04:34.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:17.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:38:08.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:32:19.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:32:19.0
bristerpostma Added Phages DB Evidence Phage Name: Sagefire_Draft Function: function unknown at 2018-11-30 16:32:19.0
bristerpostma Added HHPRED Evidence Accession: PF10665.8 Description: Minor_capsid_1 ; Minor capsid protein Query Range: (8-102) Target Range: (17-106) at 2018-11-30 16:32:19.0
bristerpostma changed the gene function to minor capsid protein at 2018-11-30 16:32:19.0
bristerpostma changed note to Minor_capsid_1 ; Minor capsid protein at 2018-11-30 16:32:19.0

Gene Number: 20
dcedwards changed synteny to Does not have HHpred alignement to HK97 gp6 or or Bacillus protein yqbG at 2019-02-07 19:37:38.0
dcedwards Added Phages DB Evidence Phage Name: Bob3 Function: function unknown at 2019-02-05 11:10:49.0
dcedwards Added HHPRED Evidence Accession: PF17395.1 Description: DUF5403 ; Family of unknown function (DUF5403) Query Range: (1-112) Target Range: (1-92) at 2019-02-05 11:10:49.0
dcedwards changed note to Possibly a tail component at 2019-02-05 11:10:49.0
dcedwards changed note to at 2019-02-05 10:55:12.0
dcedwards changed synteny to at 2019-02-05 10:55:12.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:10.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:38:28.0
faith changed the gene function to NKF at 2019-02-05 06:17:46.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 05:28:52.0
faith Added NCBI BLAST Evidence Accession: NP_075284 Query Range: (1-131) Target Range: (1-131) at 2018-12-01 05:28:52.0
faith Added HHPRED Evidence Accession: PF17395.1 Description: DUF5403 ; Family of unknown function (DUF5403) Query Range: (1-112) Target Range: (1-92) at 2018-12-01 05:28:52.0
faith changed the gene function to Unknown at 2018-12-01 05:28:52.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 05:28:52.0
jcollins changed note to strong probability 98.87% DUF5403 ; Family of unknown function (DUF5403) at 2018-10-25 06:07:14.0

Gene Number: 21
dcedwards Added Phages DB Evidence Phage Name: Naira_Draft Function: function unknown at 2019-02-05 11:17:30.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491590 Query Range: (1-148) Target Range: (1-148) at 2019-02-05 11:17:30.0
dcedwards Removed NCBI BLAST Evidence Accession: AVO22337 Query Range: (1-148) Target Range: (1-148) at 2019-02-05 11:17:30.0
dcedwards Added HHPRED Evidence Accession: 2LFP_A Description: Bacteriophage SPP1 complete nucleotide sequence; VIRAL PROTEIN; NMR {Bacillus phage SPP1} Query Range: (1-147) Target Range: (6-138) at 2019-02-05 11:17:30.0
dcedwards changed the gene function to NKF at 2019-02-05 11:17:30.0
dcedwards changed note to at 2019-02-05 11:11:22.0
dcedwards changed synteny to at 2019-02-05 11:11:22.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:07:05.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:39:10.0
tiffanylujan changed synteny to protein that connects the head and tails structures, this structural gene is near other structural genes in the genome. at 2018-12-01 12:16:17.0
tiffanylujan Added Phages DB Evidence Phage Name: Smeagol Function: head-to-tail connector complex protein at 2018-11-30 11:13:33.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVO22337 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 11:13:33.0
tiffanylujan changed the gene function to head-to-tail connector complex protein at 2018-11-30 11:13:33.0
tiffanylujan changed synteny to protein that connects the head and tails structures at 2018-11-30 11:13:33.0
khall changed note to We don’t know if its a portal protein or a head to tail connector. at 2018-10-25 06:16:08.0
khall Added HHPRED Evidence Accession: 5A21_G Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, VIRAL INFECTION, TAILED; 7.2A {BACILLUS PHAGE SPP1} Query Range: (1-145) Target Range: (3-133) at 2018-10-25 06:07:06.0
khall changed the gene function to portal protein at 2018-10-25 06:07:06.0
khall changed synteny to This is found in between capsid protein and the tap measure protein. at 2018-10-25 06:07:06.0

Gene Number: 22
dcedwards changed synteny to located adjacent to tail assembly chaperones and tape measure protein genes at 2019-02-07 19:40:14.0
dcedwards Added Phages DB Evidence Phage Name: Rufus Function: major tail subunit at 2019-02-05 11:19:58.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ49672 Query Range: (1-283) Target Range: (1-283) at 2019-02-05 11:19:58.0
dcedwards Removed NCBI BLAST Evidence Accession: AEK09316 Query Range: (1-283) Target Range: (1-283) at 2019-02-05 11:19:58.0
dcedwards Added HHPRED Evidence Accession: PF04630.11 Description: Phage_TTP_1 ; Phage tail tube protein Query Range: (56-175) Target Range: (41-163) at 2019-02-05 11:19:58.0
dcedwards changed note to major tail subunit at 2019-02-05 11:19:58.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:57.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:38:56.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009199536 Query Range: (1-283) Target Range: (1-283) at 2019-01-17 12:32:44.0
rheavensandoval Added NCBI BLAST Evidence Accession: AVJ49672 Query Range: (1-283) Target Range: (1-283) at 2019-01-17 12:32:44.0
rheavensandoval Added NCBI BLAST Evidence Accession: AEK09316 Query Range: (1-283) Target Range: (1-283) at 2019-01-17 12:32:44.0
rheavensandoval changed the gene function to major tail protein at 2019-01-17 12:32:44.0

Gene Number: 23
dcedwards Added Phages DB Evidence Phage Name: Blue Function: tail assembly chaperone at 2019-02-05 11:21:02.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009189895 Query Range: (1-128) Target Range: (1-128) at 2019-02-05 11:21:02.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ51281 Query Range: (1-121) Target Range: (1-121) at 2019-02-05 11:21:02.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009201037 Query Range: (1-121) Target Range: (1-121) at 2019-02-05 11:21:02.0
dcedwards Added HHPRED Evidence Accession: PF17388.1 Description: GP24_25 ; Tail assembly protein Gp24 and Gp25 Query Range: (1-126) Target Range: (1-130) at 2019-02-05 11:21:02.0
dcedwards changed synteny to Part of a pair of genes with programmed translational frameshift at 2019-02-05 11:20:33.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:52.0
leahdowell Added Phages DB Evidence Phage Name: TheloniousMonk Function: tail assembly chaperone at 2018-11-30 10:00:21.0
leahdowell Added Phages DB Evidence Phage Name: Ruotula Function: tail assembly chaperone at 2018-11-30 10:00:21.0
leahdowell changed the gene function to tail assembly chaperone at 2018-11-30 10:00:21.0
jburch9 Added HHPRED Evidence Accession: PF17388.1 Description: GP24_25 ; Tail assembly protein Gp24 and Gp25 Query Range: (1-126) Target Range: (1-130) at 2018-11-08 05:13:30.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009201038 Query Range: (1-128) Target Range: (1-128) at 2018-11-08 05:12:55.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009189895 Query Range: (1-128) Target Range: (1-128) at 2018-11-08 05:12:55.0
jburch9 Added NCBI BLAST Evidence Accession: AVJ51281 Query Range: (1-121) Target Range: (1-121) at 2018-11-08 05:12:55.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009201037 Query Range: (1-121) Target Range: (1-121) at 2018-11-08 05:12:55.0
jburch9 Added NCBI BLAST Evidence Accession: YP_009189894 Query Range: (1-121) Target Range: (1-121) at 2018-11-08 05:12:55.0
jburch9 changed the coding capacity to yes at 2018-11-08 05:09:43.0

Gene Number: 24
dcedwards Added Phages DB Evidence Phage Name: Crispicous1 Function: tail assembly chaperone at 2019-02-05 11:21:27.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009286700 Query Range: (1-99) Target Range: (168-266) at 2019-02-05 11:21:27.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009197601 Query Range: (1-99) Target Range: (168-266) at 2019-02-05 11:21:27.0
dcedwards Added HHPRED Evidence Accession: PF17318.1 Description: DUF5361 ; Family of unknown function (DUF5361) Query Range: (1-68) Target Range: (29-87) at 2019-02-05 11:21:27.0
dcedwards changed synteny to Part of a pair of genes with programmed translational frameshift at 2019-02-05 11:21:27.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:46.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:32:51.0
jowhites changed the gene function to tail assembly chaperone at 2018-11-08 05:14:18.0
jowhites Added NCBI BLAST Evidence Accession: AVP41786 Query Range: (1-99) Target Range: (168-266) at 2018-11-08 05:13:46.0
jowhites Added NCBI BLAST Evidence Accession: YP_009286700 Query Range: (1-99) Target Range: (168-266) at 2018-11-08 05:13:46.0
jowhites Added NCBI BLAST Evidence Accession: YP_009197601 Query Range: (1-99) Target Range: (168-266) at 2018-11-08 05:13:46.0
jowhites Added HHPRED Evidence Accession: PF17318.1 Description: DUF5361 ; Family of unknown function (DUF5361) Query Range: (1-68) Target Range: (29-87) at 2018-11-08 05:13:46.0
jowhites changed the coding capacity to yes at 2018-11-08 05:13:46.0
jowhites changed the gene function to structural protein at 2018-10-25 06:17:24.0
jowhites changed synteny to structural protein at the beginning of the c terminus at 2018-10-25 06:17:24.0

Gene Number: 25
dcedwards Added Phages DB Evidence Phage Name: Edtherson Function: tapemeasure at 2019-02-05 11:22:33.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009123892 Query Range: (1-799) Target Range: (1-823) at 2019-02-05 11:22:33.0
dcedwards Added HHPRED Evidence Accession: 5FV8_A Description: FOSW, CJUN; STRUCTURAL PROTEIN, COILED COIL DOMAIN; HET: JEF; 1.99A {N/A} Query Range: (640-690) Target Range: (3-37) at 2019-02-05 11:22:33.0
dcedwards changed note to at 2019-02-05 11:22:33.0
dcedwards changed synteny to Large gene within a set of structural genes at 2019-02-05 11:22:33.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:39.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:13:14.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 05:35:56.0
faith changed note to Tape measure proteins aid in transmitting the viral DNA into the host’s cytoplasm. at 2018-12-01 05:35:56.0
faith changed synteny to Tape measure protein at 2018-12-01 05:35:56.0
parkeramp1 Added NCBI BLAST Evidence Accession: YP_009123892 Query Range: (1-799) Target Range: (1-823) at 2018-11-08 04:52:22.0
parkeramp1 Added NCBI BLAST Evidence Accession: YP_009222387 Query Range: (1-799) Target Range: (1-823) at 2018-11-08 04:52:22.0
parkeramp1 Added Phages DB Evidence Phage Name: Edtherson Function: tapemeasure at 2018-11-08 04:51:26.0
parkeramp1 Added Phages DB Evidence Phage Name: Alvin Function: tapemeasure at 2018-11-08 04:51:26.0
parkeramp1 changed the gene function to tape measure protein at 2018-11-08 04:51:26.0

Gene Number: 26
dcedwards Added HHPRED Evidence Accession: PF05709.10 Description: Sipho_tail ; Phage tail protein Query Range: (34-214) Target Range: (1-150) at 2019-02-05 11:34:15.0
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: minor tail protein at 2019-02-05 11:28:04.0
dcedwards Removed Phages DB Evidence Phage Name: Perseus Function: minor tail subunit at 2019-02-05 11:23:41.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009016012 Query Range: (1-685) Target Range: (1-685) at 2019-02-05 11:23:41.0
dcedwards Removed HHPRED Evidence Accession: 4V96_AT Description: ORF48, ORF46, BPP; Distal tail protein, Receptor-binding protein; 3.8A {Lactococcus phage TP901-1} Query Range: (32-157) Target Range: (38-153) at 2019-02-05 11:23:41.0
dcedwards changed synteny to part of a set of minor tail protein genes that follows the tape measure protein gene at 2019-02-05 11:23:41.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:33.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:40:50.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009016012 Query Range: (1-685) Target Range: (1-685) at 2018-12-01 12:17:46.0
tiffanylujan changed synteny to Plays an essential role in tail assembly in the structural section of the genome at 2018-12-01 12:17:46.0
tiffanylujan Added Phages DB Evidence Phage Name: Perseus Function: minor tail subunit at 2018-11-30 11:20:37.0
tiffanylujan Added Phages DB Evidence Phage Name: Aeneas Function: minor tail protein at 2018-11-30 11:20:37.0
tiffanylujan Removed Phages DB Evidence Phage Name: Solon Function: function unknown at 2018-11-30 11:20:37.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009016292 Query Range: (1-685) Target Range: (1-685) at 2018-11-30 11:20:37.0
tiffanylujan Added HHPRED Evidence Accession: 4V96_AT Description: ORF48, ORF46, BPP; Distal tail protein, Receptor-binding protein; 3.8A {Lactococcus phage TP901-1} Query Range: (32-157) Target Range: (38-153) at 2018-11-30 11:20:37.0
tiffanylujan changed the gene function to minor tail protein at 2018-11-30 11:20:37.0
tiffanylujan changed synteny to Plays an essential role in tail assembly at 2018-11-30 11:20:37.0
jagraham Added HHPRED Evidence Accession: PF05709.10 Description: Sipho_tail ; Phage tail protein Query Range: (34-214) Target Range: (1-150) at 2018-11-08 05:00:58.0
jagraham Added Phages DB Evidence Phage Name: Solon Function: function unknown at 2018-11-08 04:54:09.0
jagraham changed note to hypothetical protein. at 2018-11-08 04:54:09.0

Gene Number: 27
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-05 11:34:29.0
dcedwards Added HHPRED Evidence Accession: 4HR6_A Description: LECTIN; Type II RIP, Lectin, Beta-Trefoil; HET: AMG; 2.25A {Trichosanthes anguina} Query Range: (4-13) Target Range: (28-37) at 2019-02-05 11:34:29.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-05 11:24:27.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994574 Query Range: (1-60) Target Range: (1-60) at 2019-02-05 11:24:27.0
dcedwards Added HHPRED Evidence Accession: 4HR6_A Description: LECTIN; Type II RIP, Lectin, Beta-Trefoil; HET: AMG; 2.25A {Trichosanthes anguina} Query Range: (4-13) Target Range: (28-37) at 2019-02-05 11:24:27.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:25.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:41:13.0
faith changed the gene function to NKF at 2019-02-05 06:17:59.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 12:40:37.0
rheavensandoval changed note to at 2019-01-17 12:40:37.0
katherinegrace changed note to A protein of unknown function. at 2018-11-01 06:18:48.0

Gene Number: 28
dcedwards Added Phages DB Evidence Phage Name: DD5 Function: minor tail protein at 2019-02-05 11:34:50.0
dcedwards Added HHPRED Evidence Accession: 3GS9_A Description: Protein gp18; NP_465809.1, prophage tail protein gp18; 1.7A {Listeria monocytogenes EGD-e} Query Range: (38-589) Target Range: (6-340) at 2019-02-05 11:34:50.0
dcedwards Removed Phages DB Evidence Phage Name: Zeeculate Function: minor tail protein at 2019-02-05 11:24:53.0
dcedwards Removed Phages DB Evidence Phage Name: Lockley Function: minor tail protein at 2019-02-05 11:24:53.0
dcedwards Removed NCBI BLAST Evidence Accession: ATN89368 Query Range: (1-600) Target Range: (1-600) at 2019-02-05 11:24:53.0
dcedwards Removed HHPRED Evidence Accession: 3CDD_C Description: Prophage MuSo2, 43 kDa tail; MuSo2, Shewanella oneidensis MR-1, Structural; 2.1A {Shewanella oneidensis} SCOP: b.106.1.1 Query Range: (50-575) Target Range: (15-342) at 2019-02-05 11:24:53.0
dcedwards changed synteny to part of a set of minor tail protein genes that follows the tape measure protein gene at 2019-02-05 11:24:53.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:19.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:14:07.0
leahdowell changed synteny to Protein essential for tail assembly at 2018-11-30 10:03:35.0
leahdowell Added Phages DB Evidence Phage Name: Zeeculate Function: minor tail protein at 2018-11-30 10:02:27.0
leahdowell Added Phages DB Evidence Phage Name: Lockley Function: minor tail protein at 2018-11-30 10:02:27.0
leahdowell Added Phages DB Evidence Phage Name: KSSJEB Function: minor tail protein at 2018-11-30 10:02:27.0
leahdowell Added NCBI BLAST Evidence Accession: YP_001994759 Query Range: (1-600) Target Range: (1-600) at 2018-11-30 10:02:27.0
leahdowell Added NCBI BLAST Evidence Accession: ATN89368 Query Range: (1-600) Target Range: (1-600) at 2018-11-30 10:02:27.0
leahdowell Added HHPRED Evidence Accession: 3GS9_A Description: Protein gp18; NP_465809.1, prophage tail protein gp18; 1.7A {Listeria monocytogenes EGD-e} Query Range: (38-593) Target Range: (6-341) at 2018-11-30 10:02:27.0
leahdowell Added HHPRED Evidence Accession: 3CDD_C Description: Prophage MuSo2, 43 kDa tail; MuSo2, Shewanella oneidensis MR-1, Structural; 2.1A {Shewanella oneidensis} SCOP: b.106.1.1 Query Range: (50-575) Target Range: (15-342) at 2018-11-30 10:02:27.0
leahdowell changed the gene function to minor tail protein at 2018-11-30 10:02:27.0

Gene Number: 29
dcedwards Added Phages DB Evidence Phage Name: Froghopper Function: function unknown at 2019-02-05 11:35:16.0
dcedwards Added HHPRED Evidence Accession: PF10910.7 Description: DUF2744 ; Protein of unknown function (DUF2744) Query Range: (3-137) Target Range: (1-125) at 2019-02-05 11:35:16.0
dcedwards Added Phages DB Evidence Phage Name: Edtherson Function: function unknown at 2019-02-05 11:25:24.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-02-05 11:25:24.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075293 Query Range: (1-148) Target Range: (1-148) at 2019-02-05 11:25:24.0
dcedwards Added HHPRED Evidence Accession: PF10910.7 Description: DUF2744 ; Protein of unknown function (DUF2744) Query Range: (3-137) Target Range: (1-125) at 2019-02-05 11:25:24.0
dcedwards changed note to at 2019-02-05 11:25:24.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:13.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:42:32.0
faith changed the gene function to NKF at 2019-02-05 06:18:20.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:33:57.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:33:57.0
bristerpostma changed note to Unknown function. Possible tail assembly chaperone at 2018-11-30 16:33:57.0
darknights1218 changed note to Protein of unknown function at 2018-11-01 06:19:18.0

Gene Number: 30
dcedwards Added Phages DB Evidence Phage Name: Arcanine Function: function unknown at 2019-02-05 11:37:16.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994670 Query Range: (1-110) Target Range: (1-110) at 2019-02-05 11:37:16.0
dcedwards Added HHPRED Evidence Accession: PF04688.12 Description: Holin_SPP1 ; SPP1 phage holin Query Range: (60-110) Target Range: (12-75) at 2019-02-05 11:37:16.0
dcedwards changed note to Possibly a holin gene at 2019-02-05 11:37:16.0
dcedwards changed synteny to at 2019-02-05 11:37:16.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:07.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:16:21.0
faith changed the gene function to NKF at 2019-02-05 06:18:35.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 05:42:54.0
faith changed the gene function to Unknown at 2018-12-01 05:42:54.0
faith changed note to According to Blast, it could be a minor tail protein, but HHpred doesn’t agree and where gene 30 is doesn’t align with the placement of the other minor tail proteins of the other closely related phages. at 2018-12-01 05:42:54.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 05:42:54.0

Gene Number: 31
dcedwards Added Phages DB Evidence Phage Name: Euphoria Function: function unknown at 2019-02-05 11:38:33.0
dcedwards Added HHPRED Evidence Accession: PF06667.11 Description: PspB ; Phage shock protein B Query Range: (5-74) Target Range: (1-62) at 2019-02-05 11:38:33.0
dcedwards changed note to HHpred has strong alignment with phage shock protein B at 2019-02-05 11:38:33.0
dcedwards changed synteny to at 2019-02-05 11:37:33.0
dcedwards changed note to at 2019-02-05 11:37:27.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:06:00.0
faith changed the gene function to NKF at 2019-02-05 06:18:49.0
tiffanylujan Removed Phages DB Evidence Phage Name: Papez Function: function unknown at 2018-12-01 12:18:28.0
tiffanylujan Removed HHPRED Evidence Accession: PF06295.11 Description: DUF1043 ; Protein of unknown function (DUF1043) Query Range: (14-100) Target Range: (1-74) at 2018-12-01 12:18:28.0
tiffanylujan Removed HHPRED Evidence Accession: PF10805.7 Description: DUF2730 ; Protein of unknown function (DUF2730) Query Range: (6-89) Target Range: (1-92) at 2018-12-01 12:18:28.0
tiffanylujan Added Phages DB Evidence Phage Name: Papez Function: function unknown at 2018-11-30 11:23:49.0
tiffanylujan Added Phages DB Evidence Phage Name: Euphoria Function: function unknown at 2018-11-30 11:23:49.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009016725 Query Range: (1-115) Target Range: (1-115) at 2018-11-30 11:23:49.0
tiffanylujan Added HHPRED Evidence Accession: PF06295.11 Description: DUF1043 ; Protein of unknown function (DUF1043) Query Range: (14-100) Target Range: (1-74) at 2018-11-30 11:23:49.0
tiffanylujan Added HHPRED Evidence Accession: PF10805.7 Description: DUF2730 ; Protein of unknown function (DUF2730) Query Range: (6-89) Target Range: (1-92) at 2018-11-30 11:23:49.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 11:23:49.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 11:23:49.0
cole259 changed note to hypothetical protein at 2018-11-08 05:15:15.0
cole259 changed the coding capacity to yes at 2018-11-08 05:15:15.0

Gene Number: 32
dcedwards Added Phages DB Evidence Phage Name: Bob3 Function: minor tail protein at 2019-02-07 19:43:18.0
dcedwards Removed Phages DB Evidence Phage Name: BillKnuckles Function: function unknown at 2019-02-07 19:43:18.0
dcedwards changed the gene function to minor tail protein at 2019-02-07 19:43:18.0
dcedwards changed note to Lacks HHpred evidence, but synteny indicates calling this gene a minor tail protein at 2019-02-07 19:43:18.0
dcedwards changed synteny to Appropriate gene size and location for a minor tail protein. at 2019-02-07 19:43:18.0
dcedwards Added Phages DB Evidence Phage Name: BillKnuckles Function: function unknown at 2019-02-05 11:40:08.0
dcedwards Removed Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2019-02-05 11:40:08.0
dcedwards Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2019-02-05 11:39:18.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ49137 Query Range: (1-617) Target Range: (1-617) at 2019-02-05 11:39:18.0
dcedwards Added HHPRED Evidence Accession: 2I9N_A Description: MHB4A peptide; BETA-HAIRPIN, ALPHA-HELIX, DE NOVO PROTEIN; NMR {N/A} Query Range: (517-532) Target Range: (2-17) at 2019-02-05 11:39:18.0
dcedwards changed the gene function to NKF at 2019-02-05 11:39:18.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:05:52.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:43:40.0
rheavensandoval Added Phages DB Evidence Phage Name: Bob3 Function: minor tail protein at 2019-01-17 12:47:05.0
rheavensandoval Added NCBI BLAST Evidence Accession: AVJ49137 Query Range: (1-617) Target Range: (1-617) at 2019-01-17 12:47:05.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009016298 Query Range: (1-617) Target Range: (1-617) at 2019-01-17 12:47:05.0
rheavensandoval changed the gene function to minor tail protein at 2019-01-17 12:47:05.0
dyuon3 Added HHPRED Evidence Accession: PF15967.4 Description: Nucleoporin_FG2 ; Nucleoporin FG repeated region Query Range: (27-179) Target Range: (269-421) at 2018-11-01 06:16:42.0
dyuon3 Added HHPRED Evidence Accession: 2I9N_A Description: MHB4A peptide; BETA-HAIRPIN, ALPHA-HELIX, DE NOVO PROTEIN; NMR {N/A} Query Range: (517-532) Target Range: (2-17) at 2018-11-01 06:16:42.0
dyuon3 Added TmHmm evidence at 2018-11-01 06:16:42.0

Gene Number: 33
dcedwards Added Phages DB Evidence Phage Name: Violet Function: D-Ala-D-Ala carboxypeptidase at 2019-02-05 11:43:13.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009012719 Query Range: (1-494) Target Range: (1-494) at 2019-02-05 11:43:13.0
dcedwards Added HHPRED Evidence Accession: 1CEF_A Description: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE, CEFOTAXIME GROUP; D-AMINO ACID PEPTIDASE, PENICILLIN TARGET; HET: CEF; 2.04A {Streptomyces sp.} SCOP: e.3.1.1 Query Range: (79-444) Target Range: (4-343) at 2019-02-05 11:43:13.0
dcedwards changed the gene function to minor tail protein, D-ala-D-ala carboxypeptidase at 2019-02-05 11:43:13.0
dcedwards changed synteny to at 2019-02-05 11:43:13.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:04:39.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:16:43.0
jrjones Added HHPRED Evidence Accession: 4WZ4_A Description: AmpC; beta lactamase, inhibitor, hydrolase-hydrolase inhibitor; HET: 3VU; 1.05A {Pseudomonas aeruginosa} Query Range: (77-444) Target Range: (1-359) at 2018-11-08 04:54:57.0
jrjones changed the gene function to hydrolase at 2018-11-08 04:54:57.0
jrjones changed synteny to catalyzes the hydrolysis of a particular substrate. at 2018-11-08 04:54:57.0
jrjones Added HHPRED Evidence Accession: 4NET_A Description: AmpC (E.C.3.5.2.6); beta-lactamase, antibiotic resistance, apo enzyme; HET: NO3, GOL; 1.2A {Acinetobacter baumannii} Query Range: (74-444) Target Range: (2-359) at 2018-11-08 04:52:49.0
jrjones Added HHPRED Evidence Accession: 1EI5_A Description: D-AMINOPEPTIDASE (E.C.3.4.11.-); D-AMINOPEPTIDASE, PENICILLIN BINDING PROTEIN, ALPHA/BETA; 1.9A {Ochrobactrum anthropi} SCOP: b.61.3.1, e.3.1.1 Query Range: (78-453) Target Range: (1-338) at 2018-11-08 04:52:49.0
jrjones changed the gene function to beta-lactamase at 2018-11-08 04:52:49.0
jrjones changed synteny to enzyme developed to resist antibiotics at 2018-11-08 04:52:49.0

Gene Number: 34
dcedwards changed note to at 2019-02-07 19:45:11.0
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: function unknown at 2019-02-05 11:43:54.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994581 Query Range: (1-133) Target Range: (1-133) at 2019-02-05 11:43:54.0
dcedwards Added HHPRED Evidence Accession: 3E90_A Description: NS2B cofactor, NS3 protease (E.C.3.4.21.91); West Nile virus, NS3 protease; HET: NKK; 2.45A {West Nile virus} Query Range: (103-133) Target Range: (10-40) at 2019-02-05 11:43:54.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:04:20.0
faith changed the gene function to NKF at 2019-02-05 06:19:38.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:35:36.0
bristerpostma changed note to Unknown function. No strong candidates at 2018-11-30 16:35:36.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:35:36.0
mattm113 Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-11-01 06:15:14.0
mattm113 changed note to Could not find function at 2018-11-01 06:15:14.0
mattm113 changed the start site to 28311 at 2018-10-25 06:16:00.0
mattm113 changed the start site to 28311 at 2018-10-25 06:14:51.0

Gene Number: 35
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: function unknown at 2019-02-05 11:44:25.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994582 Query Range: (1-63) Target Range: (1-63) at 2019-02-05 11:44:25.0
dcedwards Added HHPRED Evidence Accession: PF09010.9 Description: AsiA ; Anti-Sigma Factor A Query Range: (18-45) Target Range: (34-59) at 2019-02-05 11:44:25.0
dcedwards changed synteny to at 2019-02-05 11:44:25.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:04:13.0
bristerpostma changed the coding capacity to yes at 2019-02-05 08:46:29.0
faith changed the gene function to NKF at 2019-02-05 06:19:49.0
faith changed the gene function to Unknown at 2018-12-01 05:50:58.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 05:50:58.0
pcraft changed the gene function to Function Unknown at 2018-11-08 04:46:15.0
pcraft changed synteny to Hypothetical at 2018-11-08 04:46:15.0
pcraft Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-11-01 06:19:13.0
pcraft Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-11-01 06:19:13.0
pcraft Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-11-01 06:19:13.0

Gene Number: 36
dcedwards changed synteny to at 2019-02-07 19:46:08.0
dcedwards Added Phages DB Evidence Phage Name: Corvo Function: function unknown at 2019-02-05 23:16:06.0
dcedwards Added HHPRED Evidence Accession: PF12810.6 Description: Gly_rich ; Glycine rich protein Query Range: (45-114) Target Range: (1-55) at 2019-02-05 23:16:06.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:04:06.0
faith changed the gene function to NKF at 2019-02-05 06:20:00.0
tiffanylujan Added Phages DB Evidence Phage Name: ILeeKay Function: function unknown at 2018-12-01 12:19:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 12:19:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-12-01 12:19:13.0
tiffanylujan changed the gene function to unknown at 2018-12-01 12:19:13.0
haleyvanakenbdisd Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-08 04:58:09.0
haleyvanakenbdisd Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-11-08 04:58:09.0
haleyvanakenbdisd Added NCBI BLAST Evidence Accession: ATN89376 Query Range: (1-262) Target Range: (1-262) at 2018-11-08 04:55:34.0
haleyvanakenbdisd Added HHPRED Evidence Accession: PF12810.6 Description: Gly_rich ; Glycine rich protein Query Range: (45-114) Target Range: (1-55) at 2018-11-08 04:55:34.0
haleyvanakenbdisd changed the gene function to Function unknown at 2018-11-08 04:55:34.0
haleyvanakenbdisd changed synteny to Hypothetical Protein at 2018-11-08 04:55:34.0
haleyvanakenbdisd changed the coding capacity to yes at 2018-11-08 04:52:12.0

Gene Number: 37
dcedwards Added Phages DB Evidence Phage Name: Adahisdi Function: function unknown at 2019-02-05 23:24:57.0
dcedwards Added HHPRED Evidence Accession: 4XXL_A Description: MtoD; Cytochrome class-1, electron transfer, electron; HET: HEM; 1.47A {Sideroxydans lithotrophicus (strain ES-1)} Query Range: (1-47) Target Range: (1-45) at 2019-02-05 23:24:57.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:04:00.0
faith changed the gene function to NKF at 2019-02-05 06:20:11.0
rheavensandoval Added HHPRED Evidence Accession: PF12071.7 Description: DUF3551 ; Protein of unknown function (DUF3551) Query Range: (2-25) Target Range: (1-24) at 2019-01-17 12:54:31.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 12:54:31.0
rheavensandoval changed note to at 2019-01-17 12:54:31.0
slgoldberg changed note to possibly phage tail repeat like
Number of predicted TMHs: 1 at 2018-11-08 05:12:45.0
slgoldberg Added NCBI BLAST Evidence Accession: YP_008858576 Query Range: (1-98) Target Range: (1-98) at 2018-11-08 05:12:02.0
slgoldberg changed note to possibly phage tail repeat like at 2018-11-08 05:10:47.0
slgoldberg changed the coding capacity to yes at 2018-11-08 05:10:47.0

Gene Number: 38
dcedwards changed synteny to serine recombinase at 2019-02-07 19:47:38.0
dcedwards Added Phages DB Evidence Phage Name: Petp2012 Function: integrase, (S-int) at 2019-02-05 23:27:18.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ49504 Query Range: (1-527) Target Range: (1-527) at 2019-02-05 23:27:18.0
dcedwards Removed NCBI BLAST Evidence Accession: AVO25460 Query Range: (1-527) Target Range: (1-527) at 2019-02-05 23:27:18.0
dcedwards Added HHPRED Evidence Accession: 4BQQ_A Description: INTEGRASE; HYDROLASE, SERINE RECOMBINASE, UNIDIRECTIONAL, SITE-SPECIFIC; 2.15A {STREPTOMYCES PHAGE PHIC31} Query Range: (23-337) Target Range: (23-396) at 2019-02-05 23:27:18.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:09:43.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:03:50.0
leahdowell changed synteny to integration of the phage into the host genome at 2018-11-30 10:07:52.0
leahdowell Added Phages DB Evidence Phage Name: Michley Function: integrase, (S-int) at 2018-11-30 10:06:54.0
leahdowell Added Phages DB Evidence Phage Name: Petruchio Function: integrase at 2018-11-30 10:06:54.0
leahdowell Added Phages DB Evidence Phage Name: Kykar Function: integrase at 2018-11-30 10:06:54.0
leahdowell Added CDD Evidence Accession: cd00338 Query Range: (34-171) Target Range: (3-137) at 2018-11-30 10:06:54.0
leahdowell Added NCBI BLAST Evidence Accession: AVJ49504 Query Range: (1-527) Target Range: (1-527) at 2018-11-30 10:06:54.0
leahdowell Added NCBI BLAST Evidence Accession: AVO25460 Query Range: (1-527) Target Range: (1-527) at 2018-11-30 10:06:54.0
msmoore Added HHPRED Evidence Accession: 4BQQ_A Description: INTEGRASE; HYDROLASE, SERINE RECOMBINASE, UNIDIRECTIONAL, SITE-SPECIFIC; 2.15A {STREPTOMYCES PHAGE PHIC31} Query Range: (23-337) Target Range: (23-396) at 2018-11-01 06:15:36.0
msmoore changed the gene function to integrase, (S-int) at 2018-11-01 06:14:53.0
msmoore Added NCBI BLAST Evidence Accession: YP_009210389 Query Range: (1-527) Target Range: (1-527) at 2018-11-01 06:14:19.0

Gene Number: 39
dcedwards Added Phages DB Evidence Phage Name: BPBiebs31 Function: function unknown at 2019-02-05 23:27:54.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009210390 Query Range: (1-89) Target Range: (1-88) at 2019-02-05 23:27:54.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009013495 Query Range: (1-89) Target Range: (1-88) at 2019-02-05 23:27:54.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009201053 Query Range: (1-89) Target Range: (1-88) at 2019-02-05 23:27:54.0
dcedwards Added HHPRED Evidence Accession: PF15546.5 Description: DUF4653 ; Domain of unknown function (DUF4653) Query Range: (49-86) Target Range: (146-186) at 2019-02-05 23:27:54.0
dcedwards changed note to at 2019-02-05 23:27:54.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:11:19.0
faith changed the gene function to NKF at 2019-02-05 06:23:46.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:37:38.0
bristerpostma Added Phages DB Evidence Phage Name: BPBiebs31 Function: function unknown at 2018-11-30 16:37:38.0
bristerpostma Added NCBI BLAST Evidence Accession: AEJ91995 Query Range: (1-89) Target Range: (1-89) at 2018-11-30 16:37:38.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009210390 Query Range: (1-89) Target Range: (1-88) at 2018-11-30 16:37:38.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009013495 Query Range: (1-89) Target Range: (1-88) at 2018-11-30 16:37:38.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009201053 Query Range: (1-89) Target Range: (1-88) at 2018-11-30 16:37:38.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:37:38.0
bristerpostma changed note to Unknown Function. at 2018-11-30 16:37:38.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:37:38.0

Gene Number: 40
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: function unknown at 2019-02-05 23:28:19.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075304 Query Range: (1-59) Target Range: (1-59) at 2019-02-05 23:28:19.0
dcedwards Added HHPRED Evidence Accession: PF11225.7 Description: DUF3024 ; Protein of unknown function (DUF3024) Query Range: (4-50) Target Range: (6-45) at 2019-02-05 23:28:19.0
dcedwards changed note to at 2019-02-05 11:45:27.0
dcedwards changed synteny to at 2019-02-05 11:45:27.0
tiffanylujan changed the gene function to NKF at 2019-02-05 10:28:18.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:12:18.0
faith changed the gene function to NFK at 2019-02-05 06:24:05.0
faith changed the gene function to Unknown at 2018-12-01 05:54:37.0
faith changed note to Unknown function, most closely related to immunity protein 59 (HHpred), but not closely related enough for it to be that. at 2018-12-01 05:54:37.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 05:54:37.0
jcollins changed the coding capacity to yes at 2018-11-01 06:03:04.0

Gene Number: 41
dcedwards Added Phages DB Evidence Phage Name: Ichabod Function: function unknown at 2019-02-06 10:24:50.0
dcedwards Added HHPRED Evidence Accession: PF12025.7 Description: Phage_C ; Phage protein C Query Range: (10-28) Target Range: (28-46) at 2019-02-06 10:24:50.0
dcedwards Added HHPRED Evidence Accession: PF12025.7 Description: Phage_C ; Phage protein C Query Range: (10-28) Target Range: (28-46) at 2019-02-06 09:11:01.0
dcedwards changed synteny to at 2019-02-06 09:11:01.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:12:35.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:12:35.0
faith changed the gene function to NKF at 2019-02-05 06:36:53.0
tiffanylujan Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-12-01 12:20:16.0
tiffanylujan Removed Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-12-01 12:20:16.0
tiffanylujan Removed Phages DB Evidence Phage Name: Ichabod Function: function unknown at 2018-12-01 12:20:16.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_001994589 Query Range: (1-28) Target Range: (1-28) at 2018-11-30 11:32:56.0
tiffanylujan Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 11:31:31.0
tiffanylujan Added Phages DB Evidence Phage Name: Ichabod Function: function unknown at 2018-11-30 11:31:31.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 11:31:31.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 11:31:31.0
tiffanylujan changed the start site to 32664 at 2018-11-30 11:26:03.0

Gene Number: 42
dcedwards Added Phages DB Evidence Phage Name: U2 Function: function unknown at 2019-02-06 10:25:15.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491611 Query Range: (1-90) Target Range: (1-90) at 2019-02-06 10:25:15.0
dcedwards Added HHPRED Evidence Accession: 2OP7_A Description: NEDD4-like E3 ubiquitin-protein ligase WWP1; WW domain, Beta sheet, LIGASE; NMR {Homo sapiens} SCOP: k.22.1.1 Query Range: (66-86) Target Range: (1-20) at 2019-02-06 10:25:15.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:12:52.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:12:52.0
faith changed the gene function to NKF at 2019-02-05 06:37:04.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 12:59:16.0

Gene Number: 43
dcedwards Added NCBI BLAST Evidence Accession: YP_001491693 Query Range: (9-91) Target Range: (1-83) at 2019-02-06 10:28:33.0
dcedwards Added Phages DB Evidence Phage Name: Arcanine Function: function unknown at 2019-02-06 10:28:23.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001491693 Query Range: (9-91) Target Range: (1-83) at 2019-02-06 10:28:23.0
dcedwards Added HHPRED Evidence Accession: PF07927.11 Description: HicA_toxin ; HicA toxin of bacterial toxin-antitoxin, Query Range: (18-44) Target Range: (1-26) at 2019-02-06 10:28:23.0
dcedwards changed note to Potential HicA antitoxin at 2019-02-06 10:28:23.0
bristerpostma changed the coding capacity to yes at 2019-02-05 09:13:12.0
bristerpostma changed starterator analysis to SS at 2019-02-05 08:51:06.0
faith changed the gene function to NKF at 2019-02-05 06:37:13.0
leahdowell Added Phages DB Evidence Phage Name: Switzer Function: function unknown at 2018-11-30 10:09:16.0
leahdowell Added Phages DB Evidence Phage Name: Seabiscuit Function: function unknown at 2018-11-30 10:09:16.0
leahdowell Added NCBI BLAST Evidence Accession: YP_001491693 Query Range: (9-91) Target Range: (1-83) at 2018-11-30 10:09:16.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:09:16.0

Gene Number: 44
dcedwards Added Phages DB Evidence Phage Name: Pari Function: function unknown at 2019-02-06 10:31:55.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ49510 Query Range: (1-119) Target Range: (1-119) at 2019-02-06 10:31:55.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001491694 Query Range: (1-119) Target Range: (9-127) at 2019-02-06 10:31:55.0
dcedwards Added HHPRED Evidence Accession: PF14197.5 Description: Cep57_CLD_2 ; Centrosome localisation domain of PPC89 Query Range: (63-118) Target Range: (5-60) at 2019-02-06 10:31:55.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:22:11.0
faith changed the gene function to NKF at 2019-02-05 06:37:24.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:39:16.0
bristerpostma Added Phages DB Evidence Phage Name: Switzer Function: function unknown at 2018-11-30 16:39:16.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009205081 Query Range: (1-119) Target Range: (1-119) at 2018-11-30 16:39:16.0
bristerpostma Added NCBI BLAST Evidence Accession: AVJ49510 Query Range: (1-119) Target Range: (1-119) at 2018-11-30 16:39:16.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_001491694 Query Range: (1-119) Target Range: (9-127) at 2018-11-30 16:39:16.0
bristerpostma Added HHPRED Evidence Accession: PF14197.5 Description: Cep57_CLD_2 ; Centrosome localisation domain of PPC89 Query Range: (63-118) Target Range: (5-60) at 2018-11-30 16:39:16.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:39:16.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:39:16.0

Gene Number: 45
dcedwards changed synteny to Strong HHpred alignment to Klenow fragment at 2019-02-07 19:49:50.0
dcedwards changed synteny to Klenow fragment at 2019-02-07 19:49:02.0
dcedwards Added Phages DB Evidence Phage Name: Arlo Function: DNA polymerase I at 2019-02-06 10:32:16.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009011376 Query Range: (1-608) Target Range: (1-608) at 2019-02-06 10:32:16.0
dcedwards Added HHPRED Evidence Accession: 2KFZ_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 Query Range: (11-591) Target Range: (3-605) at 2019-02-06 10:32:16.0
dcedwards changed note to at 2019-02-06 09:12:07.0
dcedwards changed synteny to at 2019-02-06 09:12:07.0
bristerpostma changed starterator analysis to SS at 2019-02-05 09:22:36.0
faith changed the gene function to DNA polymerase I at 2018-12-01 06:07:46.0
faith changed note to The DNA polymerases are enzymes that create DNA molecules by assembling nucleotides, the building blocks of DNA. These enzymes are essential to DNA replication and usually work in pairs to create two identical DNA strands from one original DNA molecule. … A primer is therefore needed, at which nucleotides can be added.
This is likely the Klenow fragment of DNA polymerase I, according to HHpred. at 2018-12-01 06:07:46.0
faith changed synteny to Klenow fragment of DNA polymerase I at 2018-12-01 06:07:46.0
parkeramp1 changed note to DNA polymerase
The DNA polymerases are enzymes that create DNA molecules by assembling nucleotides, the building blocks of DNA. These enzymes are essential to DNA replication and usually work in pairs to create two identical DNA strands from one original DNA molecule. … A primer is therefore needed, at which nucleotides can be added. at 2018-11-08 05:00:38.0
parkeramp1 changed the coding capacity to yes at 2018-11-08 05:00:38.0

Gene Number: 46
dcedwards Added Phages DB Evidence Phage Name: Bones Function: function unknown at 2019-02-06 10:32:40.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001994595 Query Range: (1-76) Target Range: (1-76) at 2019-02-06 10:32:40.0
dcedwards Added HHPRED Evidence Accession: 1RJ7_E Description: Ectodysplasin A; EDA, TNF, beta-bulge, morphogen, HORMONE-GROWTH; 2.3A {Homo sapiens} SCOP: b.22.1.1 Query Range: (32-67) Target Range: (129-163) at 2019-02-06 10:32:40.0
dcedwards changed synteny to at 2019-02-06 09:12:24.0
tiffanylujan changed the coding capacity to yes at 2019-02-05 10:26:57.0
tiffanylujan changed starterator analysis to SS at 2019-02-05 10:26:57.0
faith changed the gene function to NKF at 2019-02-05 06:37:33.0
tiffanylujan Added Phages DB Evidence Phage Name: Jasper Function: function unknown at 2018-12-01 12:21:51.0
tiffanylujan Added Phages DB Evidence Phage Name: Bxb1 Function: function unknown at 2018-12-01 12:21:51.0
tiffanylujan Removed Phages DB Evidence Phage Name: Watermelon_Draft Function: function unknown at 2018-12-01 12:21:51.0
tiffanylujan Added NCBI BLAST Evidence Accession: NP_075309 Query Range: (1-76) Target Range: (1-76) at 2018-12-01 12:21:51.0
tiffanylujan Added Phages DB Evidence Phage Name: Watermelon_Draft Function: function unknown at 2018-11-30 11:36:11.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_001994595 Query Range: (1-76) Target Range: (1-76) at 2018-11-30 11:36:11.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 11:36:11.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 11:36:11.0

Gene Number: 47
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-06 10:33:05.0
dcedwards Added HHPRED Evidence Accession: 1EWS_A Description: RK-1 DEFENSIN; alpha defensin, triple-stranded beta-sheet, ANTIMICROBIAL; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1 Query Range: (52-62) Target Range: (8-18) at 2019-02-06 10:33:05.0
tiffanylujan Added Phages DB Evidence Phage Name: Zeeculate Function: function unknown at 2019-02-05 10:23:43.0
tiffanylujan Added Phages DB Evidence Phage Name: TheloniousMonk Function: function unknown at 2019-02-05 10:23:43.0
tiffanylujan Added Phages DB Evidence Phage Name: Ruotula Function: function unknown at 2019-02-05 10:23:43.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_001994507 Query Range: (1-163) Target Range: (1-163) at 2019-02-05 10:23:43.0
tiffanylujan changed starterator analysis to SS at 2019-02-05 10:23:43.0
faith changed the coding capacity to yes at 2019-02-05 10:19:55.0
faith changed the gene function to NKF at 2019-02-05 06:37:42.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:02:50.0

Gene Number: 48
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-06 10:33:24.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009031237 Query Range: (1-60) Target Range: (1-60) at 2019-02-06 10:33:24.0
dcedwards Added HHPRED Evidence Accession: PF17468.1 Description: Gp52 ; Phage protein Gp52 Query Range: (1-60) Target Range: (2-60) at 2019-02-06 10:33:24.0
tiffanylujan Added Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2019-02-05 10:14:41.0
tiffanylujan Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2019-02-05 10:14:41.0
tiffanylujan Removed NCBI BLAST Evidence Accession: YP_009031237 Query Range: (1-60) Target Range: (1-60) at 2019-02-05 10:14:41.0
tiffanylujan Added HHPRED Evidence Accession: PF17468.1 Description: Gp52 ; Phage protein Gp52 Query Range: (1-60) Target Range: (2-60) at 2019-02-05 10:14:41.0
tiffanylujan changed the coding capacity to yes at 2019-02-05 10:05:01.0
tiffanylujan changed starterator analysis to SS at 2019-02-05 10:05:01.0
faith changed the gene function to NKF at 2019-02-05 06:37:51.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:11:12.0
leahdowell Added Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2018-11-30 10:11:02.0
leahdowell Added Phages DB Evidence Phage Name: Zeeculate Function: function unknown at 2018-11-30 10:11:02.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009031237 Query Range: (1-60) Target Range: (1-60) at 2018-11-30 10:11:02.0
leahdowell Added HHPRED Evidence Accession: PF17468.1 Description: Gp52 ; Phage protein Gp52 Query Range: (1-60) Target Range: (2-60) at 2018-11-30 10:11:02.0

Gene Number: 49
dcedwards changed synteny to Strong HHpred alignment to RNA polymerase sigma factor at 2019-02-07 19:50:36.0
dcedwards Added Phages DB Evidence Phage Name: Fushigi Function: RNA polymerase sigma factor at 2019-02-06 10:34:03.0
dcedwards Added NCBI BLAST Evidence Accession: AXC38204 Query Range: (1-263) Target Range: (1-263) at 2019-02-06 10:34:03.0
dcedwards Added HHPRED Evidence Accession: 3VDO_A Description: RNA polymerase sigma factor sigK; ECF sigma factor, promoter DNA; 2.4A {Mycobacterium tuberculosis} Query Range: (3-156) Target Range: (26-185) at 2019-02-06 10:34:03.0
dcedwards changed note to at 2019-02-06 10:23:51.0
tiffanylujan changed starterator analysis to SS at 2019-02-05 09:59:04.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:41:15.0
bristerpostma Added Phages DB Evidence Phage Name: Petruchio Function: function unknown at 2018-11-30 16:41:15.0
bristerpostma Added NCBI BLAST Evidence Accession: APQ41836 Query Range: (1-263) Target Range: (1-263) at 2018-11-30 16:41:15.0
bristerpostma Added HHPRED Evidence Accession: 2LFW_A Description: PhyR sigma-like domain, NepR anti; signal transduction, response regulator, sigma; NMR {Sphingomonas sp. Fr1} Query Range: (1-172) Target Range: (1-152) at 2018-11-30 16:41:15.0
bristerpostma changed the gene function to RNA polymerase sigma factor at 2018-11-30 16:41:15.0
bristerpostma changed note to PhyR sigma-like domain, NepR anti; signal transduction, response regulator, sigma; NMR {Sphingomonas sp. Fr1} at 2018-11-30 16:41:15.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:41:15.0

Gene Number: 50
dcedwards Added Phages DB Evidence Phage Name: Bethlehem Function: function unknown at 2019-02-06 10:35:01.0
dcedwards Added HHPRED Evidence Accession: PF09035.9 Description: Tn916-Xis ; Excisionase from transposon Tn916 Query Range: (5-33) Target Range: (37-65) at 2019-02-06 10:35:01.0
dcedwards changed synteny to at 2019-02-06 10:24:18.0
dcedwards changed note to at 2019-02-06 10:24:12.0
tiffanylujan changed the coding capacity to yes at 2019-02-05 10:00:55.0
tiffanylujan changed starterator analysis to SS at 2019-02-05 10:00:55.0
tiffanylujan Added Phages DB Evidence Phage Name: Bxb1 Function: function unknown at 2019-02-05 09:56:25.0
tiffanylujan Added NCBI BLAST Evidence Accession: NP_075313 Query Range: (1-46) Target Range: (1-46) at 2019-02-05 09:56:25.0
faith changed the gene function to NKF at 2019-02-05 06:38:01.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 06:13:56.0
faith changed the gene function to Unknown at 2018-12-01 06:13:56.0
faith changed note to Gene didn’t have a high probability of being a gene of known function at 2018-12-01 06:13:56.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 06:13:56.0

Gene Number: 51
dcedwards Added HHPRED Evidence Accession: 1DQ3_A Description: CRYSTAL STRUCTURE OF AN ARCHAEAL; Endonuclease, PI-PfuI, Intein-encoded, HYDROLASE; 2.1A {Pyrococcus furiosus} SCOP: b.86.1.2, d.50.3.1, d.95.2.2 Query Range: (95-411) Target Range: (1-454) at 2019-02-06 10:42:37.0
dcedwards Removed HHPRED Evidence Accession: 2CW8_A Description: Endonuclease PI-PkoII (E.C.3.1.-.-); hydrolase; HET: GOL, SO4; 2.5A {Thermococcus kodakarensis} Query Range: (95-411) Target Range: (1-537) at 2019-02-06 10:42:37.0
dcedwards changed synteny to Contains intein domain. at 2019-02-06 10:42:37.0
dcedwards changed the gene function to phosphoesterase at 2019-02-06 10:41:46.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: phosphoesterase at 2019-02-06 10:41:27.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994511 Query Range: (1-572) Target Range: (1-572) at 2019-02-06 10:41:27.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009016744 Query Range: (1-572) Target Range: (1-572) at 2019-02-06 10:41:27.0
dcedwards Added HHPRED Evidence Accession: 2CW8_A Description: Endonuclease PI-PkoII (E.C.3.1.-.-); hydrolase; HET: GOL, SO4; 2.5A {Thermococcus kodakarensis} Query Range: (95-411) Target Range: (1-537) at 2019-02-06 10:41:27.0
faith changed the coding capacity to yes at 2019-02-05 10:17:50.0
faith changed starterator analysis to SS at 2019-02-05 10:17:50.0
tiffanylujan Removed Phages DB Evidence Phage Name: MetalQZJ_Draft Function: function unknown at 2018-12-01 12:22:30.0
tiffanylujan Added Phages DB Evidence Phage Name: Euphoria Function: RDF protein at 2018-11-30 11:48:48.0
tiffanylujan Added Phages DB Evidence Phage Name: MetalQZJ_Draft Function: function unknown at 2018-11-30 11:48:48.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009016744 Query Range: (1-572) Target Range: (1-572) at 2018-11-30 11:48:48.0
tiffanylujan Added HHPRED Evidence Accession: 1DQ3_A Description: CRYSTAL STRUCTURE OF AN ARCHAEAL; Endonuclease, PI-PfuI, Intein-encoded, HYDROLASE; 2.1A {Pyrococcus furiosus} SCOP: b.86.1.2, d.50.3.1, d.95.2.2 Query Range: (95-411) Target Range: (1-454) at 2018-11-30 11:48:48.0
tiffanylujan changed the gene function to recombination directionality factor at 2018-11-30 11:48:48.0
tiffanylujan changed synteny to The back end of the phage typically is fully of regulatory regions and this fits that idea at 2018-11-30 11:48:48.0

Gene Number: 52
dcedwards Added Phages DB Evidence Phage Name: Fajezeel Function: function unknown at 2019-02-06 10:43:46.0
dcedwards Added NCBI BLAST Evidence Accession: AUX82080 Query Range: (1-60) Target Range: (1-60) at 2019-02-06 10:43:46.0
dcedwards Added HHPRED Evidence Accession: 3H5O_A Description: Transcriptional regulator GntR; 11234b, transcription regulator, GntR,Chromobacterium violaceum; HET: SO4; 2.3A {Chromobacterium violaceum} Query Range: (27-59) Target Range: (15-47) at 2019-02-06 10:43:46.0
faith changed the coding capacity to yes at 2019-02-05 10:16:39.0
faith changed starterator analysis to SS at 2019-02-05 10:16:39.0
faith changed the gene function to NKF at 2019-02-05 06:38:11.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:06:17.0

Gene Number: 53
dcedwards changed note to at 2019-02-07 19:53:24.0
dcedwards changed synteny to Although called in some annotations as primase, we have determined a primase gene at another location. at 2019-02-07 19:52:35.0
dcedwards Added Phages DB Evidence Phage Name: Pepe Function: function unknown at 2019-02-06 10:44:20.0
faith changed the coding capacity to yes at 2019-02-05 10:15:44.0
faith changed starterator analysis to SS at 2019-02-05 10:15:44.0
faith changed the gene function to NKF at 2019-02-05 06:38:21.0
leahdowell Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 10:16:01.0
leahdowell Added Phages DB Evidence Phage Name: Pepe Function: function unknown at 2018-11-30 10:16:01.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009189921 Query Range: (1-136) Target Range: (1-136) at 2018-11-30 10:16:01.0
leahdowell Added HHPRED Evidence Accession: PF07659.10 Description: DUF1599 ; Domain of Unknown Function (DUF1599) Query Range: (53-80) Target Range: (21-57) at 2018-11-30 10:16:01.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:16:01.0
leahdowell changed note to potential penicillin binding protein at 2018-11-30 10:16:01.0

Gene Number: 54
dcedwards Added Phages DB Evidence Phage Name: Pari Function: function unknown at 2019-02-06 10:45:25.0
dcedwards Added HHPRED Evidence Accession: PF13797.5 Description: Post_transc_reg ; Post-transcriptional regulator Query Range: (22-70) Target Range: (16-67) at 2019-02-06 10:45:25.0
dcedwards changed note to at 2019-02-06 10:45:25.0
faith changed starterator analysis to SS at 2019-02-05 10:15:12.0
faith changed the gene function to NKF at 2019-02-05 06:38:29.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:43:29.0
bristerpostma Added Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2018-11-30 16:43:29.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009205093 Query Range: (1-73) Target Range: (1-73) at 2018-11-30 16:43:29.0
bristerpostma Added HHPRED Evidence Accession: PF13797.5 Description: Post_transc_reg ; Post-transcriptional regulator Query Range: (22-70) Target Range: (16-67) at 2018-11-30 16:43:29.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:43:29.0
bristerpostma changed note to Unknown function. Possible Post-transcriptional regulator at 2018-11-30 16:43:29.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:43:29.0

Gene Number: 55
dcedwards changed synteny to Strong HHpred alignment to primase. In addition, there is sequence downstream that encodes for the other primase gene. at 2019-02-07 19:54:31.0
dcedwards Added Phages DB Evidence Phage Name: Adahisdi Function: DNA primase at 2019-02-06 10:45:59.0
dcedwards Added NCBI BLAST Evidence Accession: APQ42410 Query Range: (1-166) Target Range: (28-193) at 2019-02-06 10:45:59.0
dcedwards Added HHPRED Evidence Accession: 3B39_A Description: DNA primase/DNA Complex; Protein-DNA complex, TOPRIM fold, DNA; 2.35A {Escherichia coli} Query Range: (7-166) Target Range: (89-257) at 2019-02-06 10:45:59.0
dcedwards changed the gene function to DNA primase at 2019-02-06 10:45:59.0
dcedwards changed note to at 2019-02-06 10:36:54.0
dcedwards changed synteny to at 2019-02-06 10:36:54.0
faith changed the coding capacity to yes at 2019-02-05 10:14:43.0
faith changed starterator analysis to SS at 2019-02-05 10:14:43.0
faith changed the gene function to NKF at 2019-02-05 06:38:52.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 06:20:49.0
faith changed the gene function to Unknown at 2018-12-01 06:20:49.0
faith changed note to Didn’t have a high probability of being anything of known function when run through HHpred, however the HHpred section here says something different. at 2018-12-01 06:20:49.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 06:20:49.0

Gene Number: 56
dcedwards Added HHPRED Evidence Accession: 3IS6_A Description: putative permease protein, ABC transporter; ABC, transporter, permease, porphyromonas, gingivalis; 1.95A {Porphyromonas gingivalis} Query Range: (9-36) Target Range: (181-208) at 2019-02-06 10:46:51.0
dcedwards changed synteny to at 2019-02-06 10:37:12.0
faith changed the coding capacity to yes at 2019-02-05 10:13:55.0
faith changed starterator analysis to SS at 2019-02-05 10:13:55.0
faith changed the gene function to NKF at 2019-02-05 06:39:02.0
tiffanylujan Removed Phages DB Evidence Phage Name: Niza Function: function unknown at 2018-12-01 12:25:19.0
tiffanylujan Added Phages DB Evidence Phage Name: Niza Function: function unknown at 2018-11-30 11:51:14.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008058858 Query Range: (1-54) Target Range: (1-54) at 2018-11-30 11:51:14.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 11:51:14.0
tiffanylujan changed synteny to Hypothetical Protein at 2018-11-30 11:51:14.0

Gene Number: 57
dcedwards Added Phages DB Evidence Phage Name: Che8 Function: function unknown at 2019-02-06 10:47:19.0
dcedwards Added NCBI BLAST Evidence Accession: NP_817398 Query Range: (2-34) Target Range: (4-35) at 2019-02-06 10:47:19.0
dcedwards Added HHPRED Evidence Accession: PF15330.5 Description: SIT ; SHP2-interacting transmembrane adaptor protein, SIT Query Range: (8-35) Target Range: (1-28) at 2019-02-06 10:47:19.0
faith changed the coding capacity to yes at 2019-02-05 10:13:24.0
faith changed starterator analysis to SS at 2019-02-05 10:13:24.0
faith changed the gene function to NKF at 2019-02-05 06:39:15.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:10:43.0

Gene Number: 58
dcedwards changed note to unique pham at 2019-02-06 10:53:13.0
dcedwards Added NCBI BLAST Evidence Accession: WP_068059191 Query Range: (4-80) Target Range: (3-74) at 2019-02-06 10:51:46.0
dcedwards Added HHPRED Evidence Accession: PF04414.11 Description: tRNA_deacylase ; D-aminoacyl-tRNA deacylase Query Range: (34-77) Target Range: (18-62) at 2019-02-06 10:51:46.0
faith changed the coding capacity to yes at 2019-02-05 10:12:49.0
faith changed starterator analysis to SS at 2019-02-05 10:12:49.0
faith changed the gene function to NKF at 2019-02-05 06:39:27.0
leahdowell Added Phages DB Evidence Phage Name: Winky Function: integrase (y-int) at 2018-11-30 10:21:56.0
leahdowell Added Phages DB Evidence Phage Name: Zakai Function: integrase at 2018-11-30 10:21:56.0
leahdowell Added Phages DB Evidence Phage Name: Rumpelstiltskin Function: integrase at 2018-11-30 10:21:56.0
leahdowell Added Phages DB Evidence Phage Name: BigPaolini_Draft Function: function unknown at 2018-11-30 10:21:56.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:21:56.0
leahdowell changed note to possible integrase (y-int) at 2018-11-30 10:21:56.0

Gene Number: 59
dcedwards Added Phages DB Evidence Phage Name: Adahisdi Function: function unknown at 2019-02-06 10:53:38.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_008410837 Query Range: (1-44) Target Range: (1-44) at 2019-02-06 10:53:38.0
dcedwards Added HHPRED Evidence Accession: PF17471.1 Description: Gp63 ; Hypothetical phage protein Gp63 Query Range: (5-44) Target Range: (3-73) at 2019-02-06 10:53:38.0
dcedwards changed note to at 2019-02-06 10:40:06.0
faith changed starterator analysis to SS at 2019-02-05 10:12:13.0
faith changed the gene function to NKF at 2019-02-05 06:39:37.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:45:18.0
bristerpostma Added Phages DB Evidence Phage Name: Treddle Function: function unknown at 2018-11-30 16:45:18.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009043843 Query Range: (1-44) Target Range: (2-45) at 2018-11-30 16:45:18.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008410837 Query Range: (1-44) Target Range: (1-44) at 2018-11-30 16:45:18.0
bristerpostma Added HHPRED Evidence Accession: PF17471.1 Description: Gp63 ; Hypothetical phage protein Gp63 Query Range: (5-44) Target Range: (3-73) at 2018-11-30 16:45:18.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:45:18.0
bristerpostma changed note to Unknown function. Gp63 ; Hypothetical phage protein Gp63 at 2018-11-30 16:45:18.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:45:18.0

Gene Number: 60
dcedwards changed synteny to Strong HHpred alignment to alanine methyltransferase at 2019-02-07 20:16:46.0
dcedwards Added Phages DB Evidence Phage Name: Smeagol Function: DNA methylase at 2019-02-06 10:54:12.0
dcedwards Added CDD Evidence Accession: pfam01555 Query Range: (24-360) Target Range: (1-220) at 2019-02-06 10:54:12.0
dcedwards Added NCBI BLAST Evidence Accession: AVO22374 Query Range: (1-368) Target Range: (1-356) at 2019-02-06 10:54:12.0
dcedwards Added HHPRED Evidence Accession: 1G60_A Description: Adenine-specific Methyltransferase MboIIA (E.C.2.1.1.72); STRUCTURAL GENOMICS, MORAXELLA BOVIS, DNA; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Query Range: (1-366) Target Range: (1-257) at 2019-02-06 10:54:12.0
faith changed the coding capacity to yes at 2019-02-05 10:11:28.0
faith changed starterator analysis to SS at 2019-02-05 10:11:28.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 08:19:43.0
faith Added HHPRED Evidence Accession: 1G60_A Description: Adenine-specific Methyltransferase MboIIA (E.C.2.1.1.72); STRUCTURAL GENOMICS, MORAXELLA BOVIS, DNA; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Query Range: (1-366) Target Range: (1-257) at 2018-12-01 08:19:43.0
faith Added HHPRED Evidence Accession: 1NW8_A Description: MODIFICATION METHYLASE RSRI (E.C.2.1.1.72); ADENINE DNA METHYLTRANSFERASE, ROSSMANN FOLD; 2.25A {Rhodobacter sphaeroides} SCOP: c.66.1.11 Query Range: (2-367) Target Range: (37-288) at 2018-12-01 08:19:43.0
faith Added HHPRED Evidence Accession: 5HFJ_C Description: Adenine specific DNA methyltransferase (DpnA); M1.HpyAVI, SAM, DNA BINDING PROTEIN; HET: SAM; 3.1A {Helicobacter pylori (strain ATCC 700392 / 26695)} Query Range: (4-366) Target Range: (1-232) at 2018-12-01 08:19:43.0
faith changed the gene function to methyltransferase at 2018-12-01 08:19:43.0
faith changed note to Very closely related to methyltransferases found in E. Coli phages at 2018-12-01 08:19:43.0
faith changed synteny to Methyltransferase section of a restriction modification system at 2018-12-01 08:19:43.0

Gene Number: 61
dcedwards Removed NCBI BLAST Evidence Accession: YP_009222421 Query Range: (1-164) Target Range: (1-164) at 2019-02-06 11:26:11.0
dcedwards Added Phages DB Evidence Phage Name: Arcanine Function: endonuclease VII at 2019-02-06 11:25:56.0
dcedwards Added CDD Evidence Accession: pfam02945 Query Range: (49-130) Target Range: (1-82) at 2019-02-06 11:25:56.0
dcedwards Added HHPRED Evidence Accession: PF02945.14 Description: Endonuclease_7 ; Recombination endonuclease VII Query Range: (49-130) Target Range: (1-89) at 2019-02-06 11:25:56.0
faith changed the coding capacity to yes at 2019-02-05 10:09:26.0
faith changed starterator analysis to SS at 2019-02-05 10:09:26.0
tiffanylujan Removed Phages DB Evidence Phage Name: Rhynn_Draft Function: function unknown at 2018-12-01 12:26:42.0
tiffanylujan Removed CDD Evidence Accession: pfam02945 Query Range: (49-130) Target Range: (1-82) at 2018-12-01 12:26:42.0
tiffanylujan Added Phages DB Evidence Phage Name: Rhynn_Draft Function: function unknown at 2018-11-30 12:08:11.0
tiffanylujan Added Phages DB Evidence Phage Name: Edtherson Function: EndoVII at 2018-11-30 12:08:11.0
tiffanylujan Added Phages DB Evidence Phage Name: Treddle Function: EndoVII at 2018-11-30 12:08:11.0
tiffanylujan Added CDD Evidence Accession: pfam02945 Query Range: (49-130) Target Range: (1-82) at 2018-11-30 12:08:11.0
tiffanylujan Added NCBI BLAST Evidence Accession: AJA43542 Query Range: (1-164) Target Range: (1-164) at 2018-11-30 12:08:11.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009222421 Query Range: (1-164) Target Range: (1-164) at 2018-11-30 12:08:11.0
tiffanylujan Added HHPRED Evidence Accession: 3FC3_A Description: Restriction endonuclease in complex with; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY99I; HET: PG4; 1.75A {Helicobacter pylori} Query Range: (5-132) Target Range: (72-199) at 2018-11-30 12:08:11.0
tiffanylujan Added HHPRED Evidence Accession: 3GOX_A Description: Restriction endonuclease Hpy99I; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY99I; HET: 1PE; 1.5A {Helicobacter pylori} Query Range: (5-132) Target Range: (72-199) at 2018-11-30 12:08:11.0
tiffanylujan changed the gene function to endonuclease VII at 2018-11-30 12:08:11.0
tiffanylujan changed synteny to Used for packaging and recombination which matches accordingly with the back end of bacteriophages at 2018-11-30 12:08:11.0

Gene Number: 62
dcedwards Added Phages DB Evidence Phage Name: Oogway Function: function unknown at 2019-02-06 11:26:34.0
dcedwards Added HHPRED Evidence Accession: PF11990.7 Description: DUF3487 ; Protein of unknown function (DUF3487) Query Range: (8-33) Target Range: (18-43) at 2019-02-06 11:26:34.0
faith changed the coding capacity to yes at 2019-02-05 10:06:33.0
faith changed starterator analysis to SS at 2019-02-05 10:06:33.0
faith changed the gene function to NKF at 2019-02-05 06:39:47.0
rheavensandoval Added NCBI BLAST Evidence Accession: AWN02574 Query Range: (1-37) Target Range: (1-37) at 2019-01-17 13:18:04.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:18:04.0

Gene Number: 63
dcedwards Added Phages DB Evidence Phage Name: Pollywog Function: function unknown at 2019-02-06 11:27:09.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009013518 Query Range: (1-52) Target Range: (1-52) at 2019-02-06 11:27:09.0
dcedwards Added HHPRED Evidence Accession: PF09342.10 Description: DUF1986 ; Domain of unknown function (DUF1986) Query Range: (44-64) Target Range: (75-113) at 2019-02-06 11:27:09.0
faith changed the coding capacity to yes at 2019-02-05 10:04:50.0
faith changed starterator analysis to SS at 2019-02-05 10:04:50.0
faith changed the gene function to NKF at 2019-02-05 06:39:57.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:24:09.0

Gene Number: 64
dcedwards changed synteny to Well characterized pham at 2019-02-07 20:19:03.0
dcedwards Added Phages DB Evidence Phage Name: Magnar Function: NrdH-like glutaredoxin at 2019-02-06 11:27:53.0
dcedwards Added CDD Evidence Accession: cd02976 Query Range: (7-80) Target Range: (2-73) at 2019-02-06 11:27:53.0
dcedwards Added NCBI BLAST Evidence Accession: AXC36075 Query Range: (1-85) Target Range: (1-85) at 2019-02-06 11:27:53.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ51322 Query Range: (1-84) Target Range: (1-84) at 2019-02-06 11:27:53.0
dcedwards Added HHPRED Evidence Accession: 4J56_G Description: Thioredoxin reductase 2 (E.C.1.8.1.9); Protein-Protein Complex, Thioredoxin fold, Oxidoreductase; HET: FAD; 2.371A {Plasmodium falciparum} Query Range: (1-85) Target Range: (25-114) at 2019-02-06 11:27:53.0
faith changed starterator analysis to SS at 2019-02-05 10:04:17.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:47:32.0
bristerpostma Added Phages DB Evidence Phage Name: KyMonks1A_Draft Function: function unknown at 2018-11-30 16:47:32.0
bristerpostma Added NCBI BLAST Evidence Accession: AVJ51322 Query Range: (1-84) Target Range: (1-84) at 2018-11-30 16:47:32.0
bristerpostma Added HHPRED Evidence Accession: 4EUY_A Description: Uncharacterized protein; Structural Genomics, PSI-Biology, Midwest Center; 2.9A {Bacillus cereus} Query Range: (1-85) Target Range: (15-105) at 2018-11-30 16:47:32.0
bristerpostma changed the gene function to NrdH-like glutaredoxin at 2018-11-30 16:47:32.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:47:32.0

Gene Number: 65
dcedwards Added NCBI BLAST Evidence Accession: AOT27654 Query Range: (1-84) Target Range: (13-96) at 2019-02-06 11:30:31.0
dcedwards Added HHPRED Evidence Accession: 4ZNK_A Description: Phage terminase large subunit; DNA Translocation, VIRAL PROTEIN; HET: SO4; 1.931A {Thermus phage P7426} Query Range: (3-75) Target Range: (68-183) at 2019-02-06 11:30:31.0
dcedwards changed synteny to HHpred match to terminase, however we have already identified terminase small and large subunits towards the 5′ end of the genome. at 2019-02-06 11:30:31.0
dcedwards changed note to at 2019-02-06 10:58:43.0
dcedwards changed synteny to at 2019-02-06 10:58:43.0
faith changed the coding capacity to yes at 2019-02-05 09:57:25.0
faith changed starterator analysis to SS at 2019-02-05 09:57:25.0
faith changed the gene function to NKF at 2019-02-05 06:40:06.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 08:25:30.0
faith Added HHPRED Evidence Accession: 4ZNK_A Description: Phage terminase large subunit; DNA Translocation, VIRAL PROTEIN; HET: SO4; 1.931A {Thermus phage P7426} Query Range: (3-75) Target Range: (68-183) at 2018-12-01 08:25:30.0
faith changed the gene function to unknown at 2018-12-01 08:25:30.0
faith changed note to May be the large terminase subunit, but only has 94% probability according to HHpred. at 2018-12-01 08:25:30.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 08:25:30.0

Gene Number: 66
dcedwards Added Phages DB Evidence Phage Name: Lesedi Function: function unknown at 2019-02-06 11:31:09.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009286745 Query Range: (1-24) Target Range: (9-32) at 2019-02-06 11:31:09.0
dcedwards Added HHPRED Evidence Accession: PF11517.7 Description: Nab2 ; Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) Query Range: (6-14) Target Range: (35-43) at 2019-02-06 11:31:09.0
dcedwards changed synteny to at 2019-02-06 11:31:09.0
faith changed the coding capacity to yes at 2019-02-05 09:56:46.0
faith changed starterator analysis to SS at 2019-02-05 09:56:46.0
faith changed the gene function to NKF at 2019-02-05 06:40:14.0
tiffanylujan Removed Phages DB Evidence Phage Name: Wheeler Function: function unknown at 2018-12-01 12:27:12.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 12:20:25.0
tiffanylujan changed note to at 2018-11-30 12:20:25.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 12:20:25.0
tiffanylujan changed the gene function to RecB-like Exonuclease, helicase at 2018-11-30 12:17:50.0
tiffanylujan changed the gene function to Rec B at 2018-11-30 12:17:27.0
tiffanylujan changed note to Possible cas4 at 2018-11-30 12:17:27.0
tiffanylujan changed synteny to exonuclease in the regulatory part of the genome at 2018-11-30 12:17:27.0
tiffanylujan Added Phages DB Evidence Phage Name: Wheeler Function: function unknown at 2018-11-30 12:10:41.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 12:10:41.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 12:10:41.0
tiffanylujan changed the start site to 44022 at 2018-11-30 12:09:36.0

Gene Number: 67
dcedwards changed synteny to Well characterized pham at 2019-02-07 20:19:47.0
dcedwards Added Phages DB Evidence Phage Name: Tasp14 Function: DnaB-like helicase at 2019-02-06 11:31:34.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_002224003 Query Range: (1-269) Target Range: (1-269) at 2019-02-06 11:31:34.0
dcedwards Added HHPRED Evidence Accession: 3BGW_A Description: DNAB-Like Replicative Helicase; ATPase, REPLICATION; 3.91A {Bacillus phage SPP1} Query Range: (2-268) Target Range: (168-436) at 2019-02-06 11:31:34.0
faith changed the coding capacity to yes at 2019-02-05 09:53:50.0
faith changed starterator analysis to SS at 2019-02-05 09:53:50.0
rheavensandoval Added Phages DB Evidence Phage Name: Tasp14 Function: DnaB-like helicase at 2019-01-17 13:25:08.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009197645 Query Range: (1-269) Target Range: (1-269) at 2019-01-17 13:25:08.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_002224003 Query Range: (1-269) Target Range: (1-269) at 2019-01-17 13:25:08.0
rheavensandoval changed the gene function to DNAB-like dsDNA helicase at 2019-01-17 13:25:08.0

Gene Number: 68
dcedwards Added Phages DB Evidence Phage Name: Marcell Function: function unknown at 2019-02-06 11:32:04.0
dcedwards Added NCBI BLAST Evidence Accession: AFU20767 Query Range: (1-45) Target Range: (4-48) at 2019-02-06 11:32:04.0
dcedwards Added HHPRED Evidence Accession: PF10643.8 Description: Cytochrome-c551 ; Photosystem P840 reaction-centre cytochrome c-551 Query Range: (1-20) Target Range: (9-28) at 2019-02-06 11:32:04.0
faith changed the coding capacity to yes at 2019-02-05 09:51:32.0
faith changed starterator analysis to SS at 2019-02-05 09:51:32.0
faith changed the gene function to NKF at 2019-02-05 06:40:23.0
leahdowell Added Phages DB Evidence Phage Name: Marcell Function: function unknown at 2018-11-30 10:29:35.0
leahdowell Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-11-30 10:29:35.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:29:35.0
leahdowell changed note to Possible helix-turn-helix protein at 2018-11-30 10:29:35.0

Gene Number: 69
dcedwards Added Phages DB Evidence Phage Name: Lamina13 Function: function unknown at 2019-02-06 11:34:48.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009286750 Query Range: (1-97) Target Range: (1-97) at 2019-02-06 11:34:48.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_002224005 Query Range: (1-97) Target Range: (1-97) at 2019-02-06 11:34:48.0
dcedwards Added HHPRED Evidence Accession: PF17469.1 Description: Gp68 ; Phage protein Gp68 Query Range: (21-95) Target Range: (1-75) at 2019-02-06 11:34:48.0
dcedwards changed note to at 2019-02-06 11:34:48.0
faith changed starterator analysis to SS at 2019-02-05 09:38:49.0
faith changed the gene function to NKF at 2019-02-05 06:40:34.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:49:01.0
bristerpostma Added Phages DB Evidence Phage Name: Lamina13 Function: function unknown at 2018-11-30 16:49:01.0
bristerpostma Added Phages DB Evidence Phage Name: Adahisdi_Draft Function: function unknown at 2018-11-30 16:49:01.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009032115 Query Range: (1-97) Target Range: (1-97) at 2018-11-30 16:49:01.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009286750 Query Range: (1-97) Target Range: (1-97) at 2018-11-30 16:49:01.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_002224005 Query Range: (1-97) Target Range: (1-97) at 2018-11-30 16:49:01.0
bristerpostma Added HHPRED Evidence Accession: PF17469.1 Description: Gp68 ; Phage protein Gp68 Query Range: (21-95) Target Range: (1-75) at 2018-11-30 16:49:01.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:49:01.0
bristerpostma changed note to Protein of unknown function at 2018-11-30 16:49:01.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:49:01.0

Gene Number: 70
dcedwards changed synteny to Strong HHpred alignment to helix-turn-helix DNA binding domain at 2019-02-07 20:26:16.0
dcedwards Added CDD Evidence Accession: cd04762 Query Range: (14-30) Target Range: (8-24) at 2019-02-06 11:37:31.0
dcedwards Added Phages DB Evidence Phage Name: Beatrix Function: helix-turn-helix DNA binding domain at 2019-02-06 11:37:17.0
dcedwards Added NCBI BLAST Evidence Accession: AMD43065 Query Range: (1-60) Target Range: (1-60) at 2019-02-06 11:37:17.0
dcedwards Added HHPRED Evidence Accession: 4LHF_A Description: Regulatory protein cox; helix-turn-helix, DNA binding, VIRAL PROTEIN; 2.401A {Enterobacteria phage P2} Query Range: (3-59) Target Range: (8-68) at 2019-02-06 11:37:17.0
dcedwards changed the gene function to helix-turn-helix DNA binding domain at 2019-02-06 11:37:17.0
dcedwards changed note to at 2019-02-06 11:37:17.0
dcedwards changed synteny to at 2019-02-06 11:35:01.0
faith changed the coding capacity to yes at 2019-02-05 09:30:24.0
faith changed starterator analysis to SS at 2019-02-05 09:30:24.0
faith changed the gene function to NKF at 2019-02-05 06:40:44.0
faith changed the gene function to unknown at 2018-12-01 08:33:27.0
faith changed note to Likely an excisionase, according to HHpred. at 2018-12-01 08:33:27.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 08:33:27.0

Gene Number: 71
dcedwards changed synteny to Strong HHpred alignment with Cas4, which is related the RecB-like exonucleases at 2019-02-07 20:29:26.0
dcedwards Added CDD Evidence Accession: COG2887 Query Range: (144-245) Target Range: (117-235) at 2019-02-06 12:03:08.0
dcedwards Added HHPRED Evidence Accession: cd09659 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (7-263) Target Range: (31-270) at 2019-02-06 12:03:08.0
dcedwards Added Phages DB Evidence Phage Name: SwissCheese Function: RecB-like exonuclease/helicase at 2019-02-06 11:42:06.0
dcedwards Added CDD Evidence Accession: cd09637 Query Range: (143-256) Target Range: (54-171) at 2019-02-06 11:39:50.0
dcedwards changed synteny to at 2019-02-06 11:39:50.0
dcedwards Added Phages DB Evidence Phage Name: SwissCheese Function: RecB-like Exonuclease, helicase at 2019-02-06 11:39:04.0
dcedwards Removed Phages DB Evidence Phage Name: Pippin Function: exonuclease/helicase at 2019-02-06 11:39:04.0
dcedwards Removed Phages DB Evidence Phage Name: Barriga Function: RecB at 2019-02-06 11:39:04.0
dcedwards Removed Phages DB Evidence Phage Name: Scowl Function: exonuclease at 2019-02-06 11:39:04.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ51421 Query Range: (1-267) Target Range: (1-267) at 2019-02-06 11:39:04.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009199030 Query Range: (1-267) Target Range: (1-267) at 2019-02-06 11:39:04.0
dcedwards Removed HHPRED Evidence Accession: PF12705.6 Description: PDDEXK_1 ; PD-(D/E)XK nuclease superfamily Query Range: (10-263) Target Range: (1-243) at 2019-02-06 11:39:04.0
dcedwards changed the gene function to RecB-like Exonuclease/helicase at 2019-02-06 11:39:04.0
faith changed the coding capacity to yes at 2019-02-05 09:27:04.0
faith changed starterator analysis to SS at 2019-02-05 09:27:04.0
tiffanylujan Added Phages DB Evidence Phage Name: Scowl Function: exonuclease at 2018-12-01 12:28:06.0
tiffanylujan Added Phages DB Evidence Phage Name: Barriga Function: RecB at 2018-12-01 12:28:06.0
tiffanylujan Removed Phages DB Evidence Phage Name: SwissCheese Function: RecB-like Exonuclease, helicase at 2018-12-01 12:28:06.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVJ51421 Query Range: (1-267) Target Range: (1-267) at 2018-12-01 12:28:06.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009199030 Query Range: (1-267) Target Range: (1-267) at 2018-12-01 12:28:06.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX82453 Query Range: (1-267) Target Range: (1-267) at 2018-11-30 12:22:24.0
tiffanylujan Added HHPRED Evidence Accession: PF12705.6 Description: PDDEXK_1 ; PD-(D/E)XK nuclease superfamily Query Range: (10-263) Target Range: (1-243) at 2018-11-30 12:22:24.0
tiffanylujan Added HHPRED Evidence Accession: cd09659 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (7-263) Target Range: (31-270) at 2018-11-30 12:22:24.0
tiffanylujan changed the gene function to RecB-like Exonuclease, helicase at 2018-11-30 12:21:21.0
tiffanylujan changed note to Possible cas4 at 2018-11-30 12:21:00.0
tiffanylujan changed synteny to Regulatory sequence in the regulatory region of the genome at 2018-11-30 12:21:00.0
juliettebreton Added Phages DB Evidence Phage Name: Pippin Function: exonuclease/helicase at 2018-11-08 05:16:04.0
juliettebreton Added Phages DB Evidence Phage Name: SwissCheese Function: RecB-like Exonuclease, helicase at 2018-11-08 05:16:04.0
juliettebreton changed the gene function to RecB-like Exonuclease,helicase at 2018-11-08 05:16:04.0

Gene Number: 72
dcedwards changed note to Need to identify the transposon. at 2019-02-06 12:47:58.0
dcedwards changed the gene function to transposase at 2019-02-06 12:13:52.0
dcedwards changed note to at 2019-02-06 12:13:52.0
dcedwards changed synteny to Is in the same pham as Omega gene 21, which is a transposase. at 2019-02-06 12:13:52.0
dcedwards Added Phages DB Evidence Phage Name: Omega Function: function unknown at 2019-02-06 12:09:39.0
dcedwards Removed Phages DB Evidence Phage Name: Rhynn Function: transposase at 2019-02-06 12:09:39.0
dcedwards Added Phages DB Evidence Phage Name: Rhynn Function: transposase at 2019-02-06 12:05:34.0
dcedwards Added NCBI BLAST Evidence Accession: AOZ64110 Query Range: (1-236) Target Range: (1-236) at 2019-02-06 12:05:34.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009043854 Query Range: (1-236) Target Range: (1-236) at 2019-02-06 12:05:34.0
faith changed the coding capacity to yes at 2019-02-05 09:25:08.0
faith changed starterator analysis to SS at 2019-02-05 09:25:08.0
faith changed the gene function to NKF at 2019-02-05 06:40:53.0
rheavensandoval Added NCBI BLAST Evidence Accession: YP_009043854 Query Range: (1-236) Target Range: (1-236) at 2019-01-17 13:32:25.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:32:25.0
rheavensandoval changed note to Possible DNA binding domain at 2019-01-17 13:32:25.0

Gene Number: 73
dcedwards Added Phages DB Evidence Phage Name: Acme Function: function unknown at 2019-02-06 12:48:22.0
dcedwards Added HHPRED Evidence Accession: PF16271.4 Description: DUF4924 ; Domain of unknown function (DUF4924) Query Range: (110-149) Target Range: (38-77) at 2019-02-06 12:48:22.0
dcedwards changed note to at 2019-02-06 12:48:22.0
faith changed the coding capacity to yes at 2019-02-05 09:03:40.0
faith changed starterator analysis to SS at 2019-02-05 09:03:40.0
faith changed the gene function to NKF at 2019-02-05 06:41:02.0
leahdowell Added Phages DB Evidence Phage Name: Watermelon_Draft Function: function unknown at 2018-11-30 10:35:25.0
leahdowell Added Phages DB Evidence Phage Name: Smeagol Function: function unknown at 2018-11-30 10:35:25.0
leahdowell Added NCBI BLAST Evidence Accession: YP_001491724 Query Range: (1-153) Target Range: (1-153) at 2018-11-30 10:35:25.0
leahdowell changed the gene function to unknown at 2018-11-30 10:35:25.0
hazemurphy changed the gene function to unknown protein at 2018-11-08 05:11:13.0
hazemurphy changed note to Protein of unknown function at 2018-11-08 05:11:13.0

Gene Number: 74
dcedwards Added Phages DB Evidence Phage Name: Alvin Function: function unknown at 2019-02-06 12:55:47.0
dcedwards Added HHPRED Evidence Accession: 4EDU_A Description: Sex comb on midleg-like protein; MBT fold, Royal family, Histone; 2.58A {Homo sapiens} Query Range: (11-40) Target Range: (143-180) at 2019-02-06 12:55:47.0
faith changed the coding capacity to no at 2019-02-05 08:46:54.0
faith changed starterator analysis to SS at 2019-02-05 08:35:02.0
faith changed the gene function to NKF at 2019-02-05 06:41:11.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:50:06.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008050837 Query Range: (1-55) Target Range: (3-57) at 2018-11-30 16:50:06.0
bristerpostma Added HHPRED Evidence Accession: 4EDU_A Description: Sex comb on midleg-like protein; MBT fold, Royal family, Histone; 2.58A {Homo sapiens} Query Range: (11-40) Target Range: (143-180) at 2018-11-30 16:50:06.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:50:06.0

Gene Number: 75
dcedwards Added Phages DB Evidence Phage Name: Duke13 Function: membrane protein at 2019-02-06 13:08:28.0
dcedwards Added CDD Evidence Accession: pfam14373 Query Range: (63-103) Target Range: (2-42) at 2019-02-06 13:08:28.0
dcedwards Added NCBI BLAST Evidence Accession: WP_062937363 Query Range: (1-104) Target Range: (1-104) at 2019-02-06 13:08:28.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008531053 Query Range: (1-105) Target Range: (1-105) at 2019-02-06 13:08:28.0
dcedwards Added HHPRED Evidence Accession: PF14373.5 Description: Imm_superinfect ; Superinfection immunity protein Query Range: (62-103) Target Range: (1-42) at 2019-02-06 13:08:28.0
dcedwards changed the gene function to membrane protein at 2019-02-06 13:08:28.0
dcedwards changed note to Possible superinfection immunity protein (<99%), according to HHpred. at 2019-02-06 13:08:28.0
dcedwards Added TmHmm evidence at 2019-02-06 13:08:28.0
dcedwards changed synteny to Has three possible transmembrane domains at 2019-02-06 13:08:28.0
faith changed the coding capacity to yes at 2019-02-05 08:33:37.0
faith changed starterator analysis to SS at 2019-02-05 08:33:37.0
faith changed the gene function to NKF at 2019-02-05 06:41:18.0
faith Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-12-01 08:38:28.0
faith Added HHPRED Evidence Accession: PF14373.5 Description: Imm_superinfect ; Superinfection immunity protein Query Range: (62-103) Target Range: (1-42) at 2018-12-01 08:38:28.0
faith changed the gene function to unknown at 2018-12-01 08:38:28.0
faith changed note to Likely a superinfection immunity protein (<99%), according to HHpred. at 2018-12-01 08:38:28.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 08:38:28.0

Gene Number: 76
dcedwards changed synteny to at 2019-02-07 20:31:34.0
dcedwards Added Phages DB Evidence Phage Name: Pinto Function: function unknown at 2019-02-06 13:10:02.0
dcedwards Added HHPRED Evidence Accession: PF17429.1 Description: GP70 ; Gene 70 protein Query Range: (42-87) Target Range: (2-47) at 2019-02-06 13:10:02.0
faith changed the coding capacity to yes at 2019-02-05 08:32:36.0
faith changed starterator analysis to SS at 2019-02-05 08:32:36.0
faith changed the gene function to NKF at 2019-02-05 06:41:27.0
tiffanylujan Added Phages DB Evidence Phage Name: Pinto Function: function unknown at 2018-11-30 12:27:31.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009043858 Query Range: (1-134) Target Range: (1-134) at 2018-11-30 12:27:31.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 12:27:31.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 12:27:31.0

Gene Number: 77
dcedwards changed synteny to Strong HHpred predicted MarR repressor at 2019-02-06 13:14:31.0
dcedwards Added Phages DB Evidence Phage Name: Adahisdi Function: immunity repressor at 2019-02-06 13:14:02.0
dcedwards Added HHPRED Evidence Accession: 3JW4_C Description: Transcriptional regulator, MarR/EmrR family; MarR, emrR, transcriptional regulator, DNA-binding; HET: GOL; 2.1A {Clostridium acetobutylicum} Query Range: (10-110) Target Range: (38-147) at 2019-02-06 13:14:02.0
faith changed the coding capacity to yes at 2019-02-05 08:31:24.0
faith changed starterator analysis to SS at 2019-02-05 08:31:24.0
rheavensandoval changed the gene function to immunity repressor at 2019-01-17 13:45:21.0
rheavensandoval Added NCBI BLAST Evidence Accession: NP_075336 Query Range: (1-170) Target Range: (1-170) at 2019-01-17 13:36:05.0
rheavensandoval changed the gene function to at 2019-01-17 13:36:05.0
juliettebreton changed the gene function to immunity repressor at 2018-11-08 05:10:46.0
juliettebreton Added Phages DB Evidence Phage Name: Trouble Function: immunity repressor at 2018-11-08 05:03:01.0

Gene Number: 78
dcedwards Added Phages DB Evidence Phage Name: Rajelicia Function: function unknown at 2019-02-06 13:15:04.0
dcedwards Added HHPRED Evidence Accession: PF11722.7 Description: zf-TRM13_CCCH ; CCCH zinc finger in TRM13 protein Query Range: (88-94) Target Range: (8-14) at 2019-02-06 13:15:04.0
faith changed the coding capacity to yes at 2019-02-05 08:30:31.0
faith changed the gene function to NKF at 2019-02-05 06:41:35.0
leahdowell changed note to possible membrane protein at 2018-11-30 10:37:21.0
leahdowell Added Phages DB Evidence Phage Name: Michley Function: function unknown at 2018-11-30 10:36:49.0
leahdowell Added Phages DB Evidence Phage Name: Lesedi Function: function unknown at 2018-11-30 10:36:49.0
leahdowell Added NCBI BLAST Evidence Accession: BBC43719 Query Range: (1-99) Target Range: (1-99) at 2018-11-30 10:36:49.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:36:49.0

Gene Number: 79
dcedwards Added Phages DB Evidence Phage Name: KSSJEB Function: function unknown at 2019-02-06 13:15:32.0
dcedwards Added HHPRED Evidence Accession: PF04475.11 Description: DUF555 ; Protein of unknown function (DUF555) Query Range: (14-26) Target Range: (83-95) at 2019-02-06 13:15:32.0
faith changed starterator analysis to SS at 2019-02-05 08:29:55.0
faith changed the gene function to NKF at 2019-02-05 06:41:45.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:52:09.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:51:12.0
bristerpostma Added NCBI BLAST Evidence Accession: NP_075338 Query Range: (1-53) Target Range: (3-55) at 2018-11-30 16:51:12.0
bristerpostma Added HHPRED Evidence Accession: PF04475.11 Description: DUF555 ; Protein of unknown function (DUF555) Query Range: (14-26) Target Range: (83-95) at 2018-11-30 16:51:12.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:51:12.0

Gene Number: 80
dcedwards Added Phages DB Evidence Phage Name: Bigfoot Function: function unknown at 2019-02-06 13:15:50.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009018298 Query Range: (1-89) Target Range: (1-89) at 2019-02-06 13:15:50.0
dcedwards Added HHPRED Evidence Accession: PF13453.5 Description: zf-TFIIB ; Transcription factor zinc-finger Query Range: (26-58) Target Range: (1-32) at 2019-02-06 13:15:50.0
faith changed the coding capacity to yes at 2019-02-05 08:27:48.0
faith changed starterator analysis to SS at 2019-02-05 08:27:48.0
faith changed the gene function to NKF at 2019-02-05 06:41:54.0
faith changed the gene function to Unknown at 2018-12-01 08:42:22.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 08:42:22.0

Gene Number: 81
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-02-06 13:18:29.0
dcedwards Added HHPRED Evidence Accession: PF12614.7 Description: RRF_GI ; Ribosome recycling factor Query Range: (15-23) Target Range: (39-47) at 2019-02-06 13:18:29.0
dcedwards changed synteny to at 2019-02-06 13:16:01.0
faith changed the coding capacity to yes at 2019-02-05 08:26:34.0
faith changed starterator analysis to SS at 2019-02-05 08:26:34.0
faith changed the gene function to NKF at 2019-02-05 06:42:02.0
tiffanylujan Added Phages DB Evidence Phage Name: PhrostyMug Function: function unknown at 2018-12-01 12:29:25.0
tiffanylujan Removed Phages DB Evidence Phage Name: Turj99 Function: function unknown at 2018-12-01 12:29:25.0
tiffanylujan Added Phages DB Evidence Phage Name: Turj99 Function: function unknown at 2018-11-30 12:28:15.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_001994807 Query Range: (1-67) Target Range: (1-67) at 2018-11-30 12:28:15.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 12:28:15.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 12:28:15.0

Gene Number: 82
dcedwards Added Phages DB Evidence Phage Name: Fushigi Function: function unknown at 2019-02-06 13:18:49.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994625 Query Range: (1-72) Target Range: (1-72) at 2019-02-06 13:18:49.0
dcedwards Added HHPRED Evidence Accession: 2KG4_A Description: Growth arrest and DNA-damage-inducible protein; gadd45, growth arrest, DNA damage; NMR {Homo sapiens} Query Range: (63-72) Target Range: (155-164) at 2019-02-06 13:18:49.0
faith changed the coding capacity to yes at 2019-02-05 08:25:10.0
faith changed starterator analysis to SS at 2019-02-05 08:25:10.0
faith changed the gene function to NKF at 2019-02-05 06:42:11.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:39:32.0

Gene Number: 83
dcedwards changed note to at 2019-02-07 20:35:05.0
dcedwards Added Phages DB Evidence Phage Name: AFIS Function: function unknown at 2019-02-06 13:19:44.0
dcedwards Added HHPRED Evidence Accession: PF11239.7 Description: DUF3040 ; Protein of unknown function (DUF3040) Query Range: (1-55) Target Range: (3-58) at 2019-02-06 13:19:44.0
faith changed the coding capacity to yes at 2019-02-05 08:21:31.0
faith changed starterator analysis to SS at 2019-02-05 08:21:31.0
faith changed the gene function to NKF at 2019-02-05 06:42:23.0
leahdowell Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 10:40:10.0
leahdowell Added Phages DB Evidence Phage Name: U2 Function: function unknown at 2018-11-30 10:40:10.0
leahdowell Added Phages DB Evidence Phage Name: Thor Function: function unknown at 2018-11-30 10:40:10.0
leahdowell Added NCBI BLAST Evidence Accession: NP_075341 Query Range: (1-62) Target Range: (1-62) at 2018-11-30 10:40:10.0
leahdowell Added HHPRED Evidence Accession: PF11239.7 Description: DUF3040 ; Protein of unknown function (DUF3040) Query Range: (1-55) Target Range: (3-58) at 2018-11-30 10:40:10.0
leahdowell changed the gene function to Unknown at 2018-11-30 10:40:10.0
leahdowell changed note to potential membrane protein at 2018-11-30 10:40:10.0

Gene Number: 84
dcedwards Added Phages DB Evidence Phage Name: AFIS Function: function unknown at 2019-02-06 13:20:18.0
dcedwards Added HHPRED Evidence Accession: PF17327.1 Description: AHL_synthase ; Acyl homoserine lactone synthase Query Range: (3-16) Target Range: (140-153) at 2019-02-06 13:20:18.0
dcedwards changed note to at 2019-02-06 13:20:18.0
faith changed starterator analysis to SS at 2019-02-05 08:20:35.0
faith changed the gene function to NKF at 2019-02-05 06:42:36.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 16:54:47.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008858622 Query Range: (4-58) Target Range: (1-55) at 2018-11-30 16:54:47.0
bristerpostma Added HHPRED Evidence Accession: PF17327.1 Description: AHL_synthase ; Acyl homoserine lactone synthase Query Range: (3-16) Target Range: (140-153) at 2018-11-30 16:54:47.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:54:47.0
bristerpostma changed note to Unknown function. Possible Acyl homoserine lactone synthase at 2018-11-30 16:54:47.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:54:47.0

Gene Number: 85
dcedwards Added Phages DB Evidence Phage Name: Bones Function: function unknown at 2019-02-06 13:20:46.0
dcedwards Added NCBI BLAST Evidence Accession: AZF98243 Query Range: (1-16) Target Range: (1-16) at 2019-02-06 13:20:46.0
dcedwards Added HHPRED Evidence Accession: PF04255.13 Description: DUF433 ; Protein of unknown function (DUF433) Query Range: (24-54) Target Range: (16-46) at 2019-02-06 13:20:46.0
dcedwards changed synteny to at 2019-02-06 13:20:46.0
faith changed the coding capacity to yes at 2019-02-05 08:19:07.0
faith changed starterator analysis to SS at 2019-02-05 08:19:07.0
faith changed the gene function to NKF at 2019-02-05 06:42:44.0
faith changed the gene function to unknown at 2018-12-01 08:49:11.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 08:49:11.0

Gene Number: 86
dcedwards changed synteny to Although this pham is often called for lysin A in subcluster B1, we have no evidence to suggest that function here. at 2019-02-07 20:37:12.0
dcedwards Added Phages DB Evidence Phage Name: SarFire Function: function unknown at 2019-02-06 13:21:16.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008530554 Query Range: (1-89) Target Range: (1-89) at 2019-02-06 13:21:16.0
dcedwards Added HHPRED Evidence Accession: 2KYT_A Description: Group XVI phospholipase A2 (E.C.3.1.1.4); H-REV107, tumor suppressor, phospholipase, N-terminal; NMR {Homo sapiens} Query Range: (9-22) Target Range: (4-17) at 2019-02-06 13:21:16.0
dcedwards changed synteny to at 2019-02-06 13:21:16.0
faith changed starterator analysis to SS at 2019-02-05 08:17:45.0
faith changed the gene function to NKF at 2019-02-05 06:42:53.0
tiffanylujan Removed Phages DB Evidence Phage Name: SarFire Function: function unknown at 2018-12-01 12:30:34.0
tiffanylujan Removed Phages DB Evidence Phage Name: Wanda Function: function unknown at 2018-12-01 12:30:34.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 12:30:46.0
2222bruhs changed the gene function to function unknown at 2018-11-08 05:14:46.0
2222bruhs changed synteny to potential atp binding at 2018-11-08 05:14:46.0
2222bruhs Added Phages DB Evidence Phage Name: SarFire Function: function unknown at 2018-11-08 05:06:59.0
2222bruhs Added Phages DB Evidence Phage Name: Wanda Function: function unknown at 2018-11-08 05:06:59.0
2222bruhs changed the coding capacity to yes at 2018-11-08 05:06:01.0

Gene Number: 87
dcedwards Added Phages DB Evidence Phage Name: Bones Function: function unknown at 2019-02-06 13:21:45.0
faith changed the coding capacity to yes at 2019-02-05 07:52:50.0
faith changed starterator analysis to SS at 2019-02-05 07:52:50.0
faith changed the gene function to NKF at 2019-02-05 06:43:02.0
rheavensandoval Added NCBI BLAST Evidence Accession: ATN89419 Query Range: (1-50) Target Range: (1-50) at 2019-01-17 13:44:38.0
rheavensandoval Added HHPRED Evidence Accession: PF11305.7 Description: DUF3107 ; Protein of unknown function (DUF3107) Query Range: (22-43) Target Range: (37-58) at 2019-01-17 13:44:38.0
rheavensandoval changed the gene function to Unknown at 2019-01-17 13:44:38.0

Gene Number: 88
dcedwards changed synteny to This pham is characterized as a DNA methylase and has strong HHpred alignment at 2019-02-07 20:38:30.0
dcedwards Added Phages DB Evidence Phage Name: Arcanine Function: DNA methylase at 2019-02-06 13:22:14.0
dcedwards Added CDD Evidence Accession: COG0270 Query Range: (1-106) Target Range: (1-119) at 2019-02-06 13:22:14.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ51350 Query Range: (1-227) Target Range: (3-229) at 2019-02-06 13:22:14.0
dcedwards Added HHPRED Evidence Accession: 3UBT_B Description: Modification methylase HaeIII (E.C.2.1.1.37); Protein-DNA complex, DNA cytosine-5 methyltransferase; HET: ATP, 2PE; 2.502A {Haemophilus aegyptius} Query Range: (4-149) Target Range: (1-175) at 2019-02-06 13:22:14.0
dcedwards changed synteny to at 2019-02-06 13:17:35.0
faith changed starterator analysis to SS at 2019-02-05 07:52:33.0
faith changed the coding capacity to yes at 2019-02-05 07:51:06.0
leahdowell changed synteny to addition of a methyl group to the 5-carbon position of cytosine at 2018-11-30 10:43:58.0
leahdowell Added Phages DB Evidence Phage Name: Hope4ever Function: DNA methylase at 2018-11-30 10:42:07.0
leahdowell Added Phages DB Evidence Phage Name: ConceptII Function: DNA methylase at 2018-11-30 10:42:07.0
leahdowell Added Phages DB Evidence Phage Name: Pinto Function: DNA methylase at 2018-11-30 10:42:07.0
leahdowell Added CDD Evidence Accession: COG0270 Query Range: (1-106) Target Range: (1-119) at 2018-11-30 10:42:07.0
leahdowell Added CDD Evidence Accession: TIGR00675 Query Range: (8-106) Target Range: (3-111) at 2018-11-30 10:42:07.0
leahdowell Added NCBI BLAST Evidence Accession: AWN02425 Query Range: (1-227) Target Range: (3-229) at 2018-11-30 10:42:07.0
leahdowell Added NCBI BLAST Evidence Accession: AVJ51350 Query Range: (1-227) Target Range: (3-229) at 2018-11-30 10:42:07.0
leahdowell Added HHPRED Evidence Accession: 3G7U_A Description: Cytosine-specific methyltransferase (E.C.2.1.1.37); METHYLTRANSFERASE, DNA-BINDING, NAD-BINDING, STRUCTURAL GENOMICS; HET: GOL; 1.75A {Escherichia coli O157:H7 EDL933} Query Range: (2-146) Target Range: (1-181) at 2018-11-30 10:42:07.0
leahdowell Added HHPRED Evidence Accession: 3UBT_B Description: Modification methylase HaeIII (E.C.2.1.1.37); Protein-DNA complex, DNA cytosine-5 methyltransferase; HET: ATP, 2PE; 2.502A {Haemophilus aegyptius} Query Range: (4-149) Target Range: (1-175) at 2018-11-30 10:42:07.0
leahdowell changed the gene function to DNA methylase at 2018-11-30 10:42:07.0

Gene Number: 89
dcedwards Added Phages DB Evidence Phage Name: Corvo Function: function unknown at 2019-02-06 13:22:38.0
dcedwards Added NCBI BLAST Evidence Accession: AVJ49558 Query Range: (1-27) Target Range: (21-47) at 2019-02-06 13:22:38.0
dcedwards Added HHPRED Evidence Accession: PF14030.5 Description: DUF4245 ; Protein of unknown function (DUF4245) Query Range: (6-27) Target Range: (6-27) at 2019-02-06 13:22:38.0
faith changed starterator analysis to SS at 2019-02-05 07:52:25.0
faith changed the gene function to NKF at 2019-02-05 06:43:14.0
bristerpostma changed note to at 2018-11-30 17:02:57.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 17:01:50.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 17:01:50.0
bristerpostma changed note to Unknown function. Possible at 2018-11-30 17:01:50.0
bristerpostma changed the coding capacity to yes at 2018-11-30 17:01:50.0
bristerpostma changed the start site to 52885 at 2018-11-30 16:55:40.0

Gene Number: 90
dcedwards Added Phages DB Evidence Phage Name: Adahisdi Function: function unknown at 2019-02-06 13:22:59.0
dcedwards Added NCBI BLAST Evidence Accession: AXC33646 Query Range: (1-67) Target Range: (17-83) at 2019-02-06 13:22:59.0
dcedwards Added HHPRED Evidence Accession: PF17463.1 Description: Gp79 ; Gene Product 79 Query Range: (16-67) Target Range: (1-51) at 2019-02-06 13:22:59.0
faith changed starterator analysis to SS at 2019-02-05 07:52:17.0
faith changed the coding capacity to yes at 2019-02-05 07:39:01.0
faith Added HHPRED Evidence Accession: PF17463.1 Description: Gp79 ; Gene Product 79 Query Range: (16-67) Target Range: (1-51) at 2019-02-05 07:09:38.0
faith changed the gene function to NKF at 2019-02-05 07:09:38.0