Phage Name: Zeuska

Gene Number: 1
dcedwards Removed NCBI BLAST Evidence Accession: YP_009043785 Query Range: (1-98) Target Range: (22-119) at 2019-02-02 16:07:19.0
dcedwards changed note to  at 2019-02-02 16:07:19.0
dcedwards changed starterator analysis to SS at 2019-01-31 15:48:01.0
dcedwards changed synteny to Gene 1 in Cluster A phages is usually a HNH endonuclease oriented in the forwards direction. at 2019-01-31 15:25:53.0
dcedwards changed synteny to Ususally found at the beginning of the genome. at 2019-01-31 15:17:46.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:15:17.0
dcedwards Added Phages DB Evidence Phage Name: Bones Function: HNH endonuclease at 2019-01-31 05:28:12.0
dcedwards Added HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (8-78) Target Range: (53-130) at 2019-01-31 05:28:12.0
dcedwards Added HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (8-75) Target Range: (53-127) at 2019-01-31 05:25:01.0
dcedwards changed the gene function to HNH endonuclease at 2019-01-31 05:19:36.0
dcedwards changed note to Possible HNH endonucleases used for packaging  and is typically found in the beginning of the genome at 2019-01-31 05:19:36.0
tiffanylujan Added Phages DB Evidence Phage Name: Pinto Function: HNH endonuclease at 2018-12-01 12:38:56.0
tiffanylujan Removed Phages DB Evidence Phage Name: Zeeculate Function: HNH endonuclease at 2018-12-01 12:38:56.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_002223942 Query Range: (1-98) Target Range: (1-98) at 2018-12-01 12:38:56.0
tiffanylujan Removed HHPRED Evidence Accession: 5H0O_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.53A {Geobacillus virus E2} Query Range: (8-75) Target Range: (53-127) at 2018-12-01 12:38:56.0
tiffanylujan Removed HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (8-75) Target Range: (53-127) at 2018-12-01 12:38:56.0
tiffanylujan changed the gene function to Unknown at 2018-12-01 12:38:56.0
tiffanylujan changed note to Possible HNH endonucleases lis used for packaging  and is typically found in the beginning of the genome at 2018-12-01 12:38:56.0
tiffanylujan changed synteny to  at 2018-12-01 12:38:56.0
bristerpostma changed the start site to 599 at 2018-11-30 08:40:10.0
dcedwards changed the gene function to HNH endonuclease at 2018-11-30 07:46:32.0
gmcquain29 changed the gene function to unknown at 2018-11-06 05:38:54.0
gmcquain29 changed note to Possible HNH endonuclease, lysin b at 2018-11-06 05:38:54.0
cmorgan changed the start site to 599 at 2018-10-23 06:16:49.0
ctuggle changed the start site to 722 at 2018-10-23 06:13:20.0
dcedwards Added HHPRED Evidence Accession: 5H0M_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.52A {Geobacillus virus E2} Query Range: (8-75) Target Range: (53-127) at 2018-10-16 06:37:21.0
dcedwards changed synteny to HNH endonucleases located at the beginning of the genome at 2018-10-16 06:37:21.0
dcedwards Added Phages DB Evidence Phage Name: ILeeKay Function: HNH endonuclease at 2018-10-15 05:30:50.0
dcedwards Added Phages DB Evidence Phage Name: Zeeculate Function: HNH endonuclease at 2018-10-15 05:30:50.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009043785 Query Range: (1-98) Target Range: (22-119) at 2018-10-15 05:30:50.0
dcedwards Added HHPRED Evidence Accession: 5H0O_A Description: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA; 1.53A {Geobacillus virus E2} Query Range: (8-75) Target Range: (53-127) at 2018-10-15 05:30:50.0
dcedwards changed the gene function to HNH endonuclease at 2018-10-15 05:30:50.0

Gene Number: 2
dcedwards changed synteny to Usually found at the beginning of the genome. Has helix-turn-helix domain for dimerization for forming the terminase complex. at 2019-02-07 22:17:59.0
dcedwards Removed NCBI BLAST Evidence Accession: AXC33651 Query Range: (1-146) Target Range: (1-146) at 2019-02-02 16:08:02.0
faith changed starterator analysis to SS at 2019-01-31 15:55:26.0
dcedwards changed synteny to Usually found at the beginning of the genome. If there is a small terminase subunit, there should also be a large terminase subunit. at 2019-01-31 15:18:38.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:16:33.0
dcedwards Added NCBI BLAST Evidence Accession: AXC33651 Query Range: (1-146) Target Range: (1-146) at 2019-01-31 05:34:19.0
dcedwards Added NCBI BLAST Evidence Accession: YP_002223943 Query Range: (1-146) Target Range: (1-146) at 2019-01-31 05:34:19.0
dcedwards Added HHPRED Evidence Accession: PF05119.11 Description: Terminase_4 ; Phage terminase, small subunit Query Range: (48-120) Target Range: (1-97) at 2019-01-31 05:34:19.0
dcedwards Added Phages DB Evidence Phage Name: Maroc7 Function: terminase small subunit at 2019-01-31 05:31:53.0
elizabethbloodworth changed the gene function to terminase, small subunit at 2018-11-06 05:09:45.0
dnowell Added HHPRED Evidence Accession: PF05119.11 Description: Terminase_4 ; Phage terminase, small subunit Query Range: (48-120) Target Range: (1-97) at 2018-10-02 06:58:43.0

Gene Number: 3
faith changed starterator analysis to SS at 2019-01-31 15:57:13.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:19:21.0
dcedwards Added Phages DB Evidence Phage Name: Michley Function: function unknown at 2019-01-31 05:35:03.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994735 Query Range: (1-76) Target Range: (1-76) at 2019-01-31 05:35:03.0
dcedwards Added HHPRED Evidence Accession: PF13953.5 Description: PapC_C ; PapC C-terminal domain Query Range: (3-38) Target Range: (2-35) at 2019-01-31 05:35:03.0
dcedwards changed the gene function to NKF at 2019-01-31 05:19:59.0
malloryb changed the gene function to unknown at 2018-10-23 06:34:26.0

Gene Number: 4
dcedwards changed synteny to Minor tail proteins can occur near the start of the genome in cluster A1 phages at 2019-02-07 22:20:10.0
dcedwards changed the gene function to minor tail protein at 2019-02-07 22:19:53.0
dcedwards changed synteny to Minor tail proteins can occur near the start of the gnome at 2019-02-07 22:19:53.0
dcedwards Added Phages DB Evidence Phage Name: JC27 Function: minor tail protein at 2019-02-07 22:19:29.0
dcedwards Added NCBI BLAST Evidence Accession: AEK09205 Query Range: (1-356) Target Range: (1-356) at 2019-02-07 22:19:29.0
dcedwards Removed NCBI BLAST Evidence Accession: AEK09300 Query Range: (1-356) Target Range: (1-356) at 2019-02-07 22:19:29.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-02-02 16:08:51.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_008410784 Query Range: (1-356) Target Range: (1-356) at 2019-02-02 16:08:51.0
faith changed starterator analysis to SS at 2019-01-31 15:57:45.0
dcedwards changed note to  at 2019-01-31 15:19:57.0
dcedwards Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (123-193) Target Range: (1-48) at 2019-01-31 05:35:27.0
dcedwards changed the gene function to NKF at 2019-01-31 05:20:13.0
bristerpostma Added Phages DB Evidence Phage Name: Ruotula Function: function unknown at 2018-11-30 15:35:57.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:15:23.0
bristerpostma Added NCBI BLAST Evidence Accession: AEK09300 Query Range: (1-356) Target Range: (1-356) at 2018-11-30 15:15:23.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008410784 Query Range: (1-356) Target Range: (1-356) at 2018-11-30 15:15:23.0
bristerpostma changed note to Unknown function at 2018-11-30 15:15:23.0
bristerpostma Removed HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (123-193) Target Range: (1-48) at 2018-11-30 14:44:22.0
bristerpostma Added HHPRED Evidence Accession: PF12789.6 Description: PTR ; Phage tail repeat like Query Range: (123-193) Target Range: (1-48) at 2018-11-30 14:43:28.0
bristerpostma changed the gene function to unknown function at 2018-11-30 14:43:28.0
bristerpostma changed note to Possible transglutaminase-family protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2; 2.4A {Bacteroides fragilis NCTC 9343} at 2018-11-30 14:43:28.0
hayleeburt changed the coding capacity to yes at 2018-10-23 06:25:43.0

Gene Number: 5
faith changed starterator analysis to SS at 2019-01-31 15:58:16.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 15:22:04.0
dcedwards changed note to  at 2019-01-31 15:22:04.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:22:04.0
dcedwards changed synteny to  at 2019-01-31 15:22:04.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009283253 Query Range: (1-233) Target Range: (1-233) at 2019-01-31 05:35:48.0
dcedwards Added HHPRED Evidence Accession: PF05968.10 Description: Bacillus_PapR ; Bacillus PapR protein Query Range: (2-32) Target Range: (16-46) at 2019-01-31 05:35:48.0
dcedwards changed the gene function to NKF at 2019-01-31 05:20:33.0
faith Added Phages DB Evidence Phage Name: Papez Function: function unknown at 2018-11-30 10:08:21.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 10:08:21.0
faith changed the gene function to Unknown at 2018-11-30 09:48:31.0
faith changed note to Function unknown at 2018-11-30 09:48:31.0
faith changed synteny to hypothetical protein at 2018-11-30 09:48:31.0
reaganchandler changed the start site to 3138 at 2018-10-23 06:23:40.0

Gene Number: 6
faith changed starterator analysis to SS at 2019-01-31 15:58:45.0
dcedwards changed note to  at 2019-01-31 15:22:41.0
dcedwards Added HHPRED Evidence Accession: 3E8V_A Description: Possible transglutaminase-family protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2; 2.4A {Bacteroides fragilis NCTC 9343} Query Range: (3-67) Target Range: (2-63) at 2019-01-31 05:36:13.0
dcedwards changed the gene function to NKF at 2019-01-31 05:21:01.0
tiffanylujan Added Phages DB Evidence Phage Name: PattyP Function: function unknown at 2018-12-01 12:39:44.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AFU20720 Query Range: (1-86) Target Range: (1-86) at 2018-12-01 12:39:44.0
tiffanylujan Removed NCBI BLAST Evidence Accession: APQ42363 Query Range: (1-86) Target Range: (1-86) at 2018-12-01 12:39:44.0
tiffanylujan Removed HHPRED Evidence Accession: 3E8V_A Description: Possible transglutaminase-family protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2; 2.4A {Bacteroides fragilis NCTC 9343} Query Range: (3-67) Target Range: (2-63) at 2018-12-01 12:39:44.0
tiffanylujan Added NCBI BLAST Evidence Accession: NP_075273 Query Range: (1-86) Target Range: (1-86) at 2018-11-30 08:16:10.0
tiffanylujan Added NCBI BLAST Evidence Accession: AFU20720 Query Range: (1-86) Target Range: (1-86) at 2018-11-30 08:16:10.0
tiffanylujan Added NCBI BLAST Evidence Accession: APQ42363 Query Range: (1-86) Target Range: (1-86) at 2018-11-30 08:16:10.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 08:07:51.0
torrey changed the gene function to Unknown at 2018-11-06 05:31:47.0
torrey changed note to Possible transglutaminase at 2018-11-06 05:31:47.0
torrey Added HHPRED Evidence Accession: 3E8V_A Description: Possible transglutaminase-family protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2; 2.4A {Bacteroides fragilis NCTC 9343} Query Range: (3-67) Target Range: (2-63) at 2018-11-06 05:30:40.0
torrey changed the start site to 3853 at 2018-11-06 05:08:31.0

Gene Number: 7
faith changed starterator analysis to SS at 2019-01-31 15:59:20.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:23:13.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 05:36:34.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491577 Query Range: (1-85) Target Range: (1-85) at 2019-01-31 05:36:34.0
dcedwards Added HHPRED Evidence Accession: 3SOH_B Description: Flagellar motor switch protein FliM; protein-protein complex, alpha/beta, MOTOR PROTEIN; 3.5A {Thermotoga maritima} Query Range: (14-83) Target Range: (5-67) at 2019-01-31 05:36:34.0
dcedwards changed the gene function to NKF at 2019-01-31 05:21:22.0

Gene Number: 8
dcedwards changed synteny to Strong HHpred alignment to HNH endouclease. Commonly called function for this pham. at 2019-02-07 22:28:33.0
dcedwards Added CDD Evidence Accession: pfam13392 Query Range: (52-95) Target Range: (2-45) at 2019-02-02 16:10:48.0
dcedwards Removed HHPRED Evidence Accession: d1u3em1 Description: d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SPO1 [TaxId: 10685]} Query Range: (1-103) Target Range: (1-105) at 2019-02-02 16:10:48.0
dcedwards Removed Phages DB Evidence Phage Name: Solon Function: HNH endonuclease at 2019-02-02 16:09:52.0
faith changed starterator analysis to SS at 2019-01-31 15:59:50.0
dcedwards changed note to There are two HNH endonuclease genes identified during annotation. at 2019-01-31 15:24:15.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:24:15.0
dcedwards changed synteny to  at 2019-01-31 15:24:15.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994740 Query Range: (1-193) Target Range: (1-193) at 2019-01-31 05:37:01.0
leahdowell changed synteny to terminase-mediated cleavage at 2018-11-30 09:30:13.0
leahdowell Added Phages DB Evidence Phage Name: Solon Function: HNH endonuclease at 2018-11-30 08:09:54.0
leahdowell Added Phages DB Evidence Phage Name: DD5 Function: HNH endonuclease at 2018-11-30 08:09:54.0
leahdowell Added HHPRED Evidence Accession: d1u3em1 Description: d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SPO1 [TaxId: 10685]} Query Range: (1-103) Target Range: (1-105) at 2018-11-30 08:09:54.0
leahdowell Added HHPRED Evidence Accession: 1U3E_M Description: PROTEIN/DNA Complex; HNH catalytic motif, Helix-turn-helix DNA; HET: EDO; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3, d.285.1.1 Query Range: (1-103) Target Range: (1-105) at 2018-11-30 08:09:54.0
bdeaver changed the gene function to HNH endonuclease at 2018-10-23 06:46:03.0

Gene Number: 9
dcedwards Added Phages DB Evidence Phage Name: BillKnuckles Function: lysin A at 2019-02-02 16:13:21.0
dcedwards Added NCBI BLAST Evidence Accession: YP_002223950 Query Range: (1-460) Target Range: (1-460) at 2019-02-02 16:13:21.0
dcedwards Added HHPRED Evidence Accession: 4OK7_B Description: Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} Query Range: (163-330) Target Range: (15-222) at 2019-02-02 16:13:21.0
faith changed starterator analysis to SS at 2019-01-31 16:19:26.0
faith changed the coding capacity to yes at 2019-01-31 16:15:50.0
faith changed the start site to 4959 at 2019-01-31 16:15:13.0
dcedwards changed synteny to Lysin b gene is downstream at 2019-01-31 15:33:31.0
dcedwards changed synteny to lysin b is downstream at 2019-01-31 15:31:37.0
dcedwards changed note to  at 2019-01-31 05:40:03.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 05:38:15.0
dcedwards Removed HHPRED Evidence Accession: 4OK7_B Description: Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} Query Range: (177-344) Target Range: (15-222) at 2019-01-31 05:38:15.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:35:28.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:12:57.0
bristerpostma Added Phages DB Evidence Phage Name: Solon Function: lysin A at 2018-11-30 15:12:57.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_002223950 Query Range: (15-474) Target Range: (1-460) at 2018-11-30 15:12:57.0
bristerpostma changed the gene function to lysin A at 2018-11-30 15:12:57.0
bristerpostma changed note to lysin A [Mycobacterium phage Solon] >gi|593780414|ref|YP_009018237.1| lysin A [Mycobacterium virus Billknuckles] >gi|971756773|ref|YP_009210361.1| lysin A [Mycobacterium phage Nerujay] >gi|197312555|gb|ACH62909.1| lysin A [Mycobacterium phage Solon] >gi|354996960|gb|AER48301.1| lysin A [Mycobacterium virus Billknuckles] >gi|817036495|gb|AKF14774.1| lysin A [Mycobacterium phage Nerujay] at 2018-11-30 15:12:57.0
bristerpostma Added HHPRED Evidence Accession: 4OK7_B Description: Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} Query Range: (177-344) Target Range: (15-222) at 2018-11-30 14:52:00.0
bristerpostma changed the gene function to endolysin, LysM-like at 2018-11-30 14:52:00.0
bristerpostma changed note to Putative endolysin; Helical protein, Hydrolase; HET: GOL, SO4; 1.9A {Salmonella phage SPN1S} at 2018-11-30 14:52:00.0
austinmcg10 changed the gene function to Unknown at 2018-11-06 05:22:19.0
austinmcg10 changed note to Possibly Lysin A at 2018-11-06 05:22:19.0
austinmcg10 changed the start site to 4917 at 2018-11-06 05:18:34.0

Gene Number: 10
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-02-02 16:13:40.0
dcedwards changed note to  at 2019-01-31 17:20:13.0
dcedwards changed synteny to  at 2019-01-31 17:20:13.0
faith changed starterator analysis to SS at 2019-01-31 16:16:15.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:37:21.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009016276 Query Range: (1-68) Target Range: (11-78) at 2019-01-31 05:40:29.0
dcedwards Added HHPRED Evidence Accession: PF06698.10 Description: DUF1192 ; Protein of unknown function (DUF1192) Query Range: (6-23) Target Range: (25-42) at 2019-01-31 05:40:29.0
dcedwards changed the gene function to NKF at 2019-01-31 05:21:55.0
faith Added Phages DB Evidence Phage Name: Ringer_Draft Function: function unknown at 2018-11-30 10:11:28.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 10:11:28.0
faith changed the gene function to Unknown at 2018-11-30 10:03:33.0
faith changed note to Unknown function at 2018-11-30 10:03:33.0
faith changed synteny to Hypothetical protein at 2018-11-30 10:03:33.0

Gene Number: 11
dcedwards Removed NCBI BLAST Evidence Accession: AOQ29367 Query Range: (1-322) Target Range: (1-322) at 2019-02-02 16:15:45.0
faith changed starterator analysis to SS at 2019-01-31 16:17:37.0
dcedwards changed synteny to Lysin A gene is upstream at 2019-01-31 15:33:09.0
dcedwards Removed Phages DB Evidence Phage Name: Perseus Function: lysin B at 2019-01-31 05:41:26.0
dcedwards Removed HHPRED Evidence Accession: 3HC7_A Description: Gene 12 protein; alpha/beta sandwich, CELL ADHESION; 2.0A {Mycobacterium phage D29} Query Range: (79-320) Target Range: (2-253) at 2019-01-31 05:41:26.0
tiffanylujan changed synteny to Facilitates lysis which would be in front of the genome at 2018-12-01 12:42:53.0
tiffanylujan Added Phages DB Evidence Phage Name: Bigfoot Function: lysin B at 2018-12-01 12:42:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: DrFeelGood Function: lysin B at 2018-12-01 12:42:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: SwissCheese Function: lysin B at 2018-12-01 12:42:13.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009015997 Query Range: (1-322) Target Range: (1-322) at 2018-11-30 08:33:15.0
tiffanylujan Added NCBI BLAST Evidence Accession: AOQ29367 Query Range: (1-322) Target Range: (1-322) at 2018-11-30 08:33:15.0
tiffanylujan Added HHPRED Evidence Accession: 3HC7_A Description: Gene 12 protein; alpha/beta sandwich, CELL ADHESION; 2.0A {Mycobacterium phage D29} Query Range: (79-320) Target Range: (2-253) at 2018-11-30 08:32:47.0
tiffanylujan changed the gene function to lysin B at 2018-11-30 08:32:26.0
tiffanylujan changed synteny to Facilitates lysis at 2018-11-30 08:32:26.0
tiffanylujan Added Phages DB Evidence Phage Name: DrFeelGood Function: lysin B at 2018-11-30 08:28:16.0
tiffanylujan Added Phages DB Evidence Phage Name: SwissCheese Function: lysin B at 2018-11-30 08:28:16.0
tiffanylujan Added Phages DB Evidence Phage Name: Perseus Function: lysin B at 2018-11-30 08:28:16.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 08:27:49.0

Gene Number: 12
faith changed starterator analysis to SS at 2019-01-31 16:23:20.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:36:29.0
dcedwards changed synteny to The terminase small subunit gene was identified upstream. at 2019-01-31 15:35:19.0
dcedwards Added Phages DB Evidence Phage Name: CactusRose Function: terminase large subunit at 2019-01-31 05:42:29.0
dcedwards Added CDD Evidence Accession: COG4626 Query Range: (70-540) Target Range: (76-523) at 2019-01-31 05:42:29.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994559 Query Range: (1-562) Target Range: (1-562) at 2019-01-31 05:42:29.0
dcedwards changed the gene function to terminase, large subunit at 2019-01-31 05:42:29.0
cmorgan Added HHPRED Evidence Accession: PF03354.14 Description: Terminase_1 ; Phage Terminase Query Range: (61-546) Target Range: (1-465) at 2018-10-23 06:45:54.0
cmorgan changed the gene function to terminase at 2018-10-23 06:45:54.0

Gene Number: 13
faith changed starterator analysis to SS at 2019-01-31 16:23:43.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:36:18.0
dcedwards changed synteny to Located at beginning of structural gene set. Annotated only one portal gene. at 2019-01-31 15:36:18.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: portal protein at 2019-01-31 05:43:14.0
dcedwards Added CDD Evidence Accession: pfam05133 Query Range: (54-440) Target Range: (47-415) at 2019-01-31 05:43:14.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009209402 Query Range: (1-480) Target Range: (1-480) at 2019-01-31 05:43:14.0
dcedwards Added HHPRED Evidence Accession: 2JES_G Description: PORTAL PROTEIN, UNIDENTIFIED FRAGMENT OF; BACTERIOPHAGE SPP1, DNA TRANSLOCATION, MOLECULAR; HET: CA, HG; 3.4A {BACTERIOPHAGE SPP1} Query Range: (6-465) Target Range: (32-496) at 2019-01-31 05:43:14.0
leahdowell Added Phages DB Evidence Phage Name: Zeeculate Function: portal protein at 2018-11-30 09:54:52.0
leahdowell Added Phages DB Evidence Phage Name: Wilkins Function: portal protein at 2018-11-30 09:54:52.0
leahdowell Removed Phages DB Evidence Phage Name: Nerujay Function: portal protein at 2018-11-30 09:54:52.0
leahdowell Removed Phages DB Evidence Phage Name: Abrogate Function: portal protein at 2018-11-30 09:54:52.0
leahdowell Added CDD Evidence Accession: pfam05133 Query Range: (54-440) Target Range: (47-415) at 2018-11-30 09:54:52.0
leahdowell Added NCBI BLAST Evidence Accession: YP_001491582 Query Range: (1-480) Target Range: (1-480) at 2018-11-30 09:54:52.0
leahdowell Added NCBI BLAST Evidence Accession: ATN89353 Query Range: (1-480) Target Range: (1-480) at 2018-11-30 09:54:52.0
leahdowell Added HHPRED Evidence Accession: PF05133.13 Description: Phage_prot_Gp6 ; Phage portal protein, SPP1 Gp6-like Query Range: (10-436) Target Range: (3-414) at 2018-11-30 09:54:52.0
leahdowell Added HHPRED Evidence Accession: 2JES_G Description: PORTAL PROTEIN, UNIDENTIFIED FRAGMENT OF; BACTERIOPHAGE SPP1, DNA TRANSLOCATION, MOLECULAR; HET: CA, HG; 3.4A {BACTERIOPHAGE SPP1} Query Range: (6-460) Target Range: (32-491) at 2018-11-30 09:54:52.0
leahdowell Removed HHPRED Evidence Accession: 2JES_G Description: PORTAL PROTEIN, UNIDENTIFIED FRAGMENT OF; BACTERIOPHAGE SPP1, DNA TRANSLOCATION, MOLECULAR; HET: CA, HG; 3.4A {BACTERIOPHAGE SPP1} Query Range: (6-465) Target Range: (32-496) at 2018-11-30 09:54:52.0
leahdowell Removed HHPRED Evidence Accession: 5A20_B Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE; 7.6A {BACILLUS PHAGE SPP1} Query Range: (6-465) Target Range: (32-496) at 2018-11-30 09:54:52.0
leahdowell Removed HHPRED Evidence Accession: PF05133.13 Description: Phage_prot_Gp6 ; Phage portal protein, SPP1 Gp6-like Query Range: (10-438) Target Range: (3-416) at 2018-11-30 09:54:52.0
leahdowell changed synteny to molecular motor that translocates DNA to the procapsid interior at 2018-11-30 09:31:55.0
leahdowell Added Phages DB Evidence Phage Name: Nerujay Function: portal protein at 2018-11-30 08:12:39.0
leahdowell Added Phages DB Evidence Phage Name: Abrogate Function: portal protein at 2018-11-30 08:12:39.0
leahdowell Added HHPRED Evidence Accession: 2JES_G Description: PORTAL PROTEIN, UNIDENTIFIED FRAGMENT OF; BACTERIOPHAGE SPP1, DNA TRANSLOCATION, MOLECULAR; HET: CA, HG; 3.4A {BACTERIOPHAGE SPP1} Query Range: (6-465) Target Range: (32-496) at 2018-11-30 08:12:39.0
leahdowell Added HHPRED Evidence Accession: 5A20_B Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE; 7.6A {BACILLUS PHAGE SPP1} Query Range: (6-465) Target Range: (32-496) at 2018-11-30 08:12:39.0
leahdowell Added HHPRED Evidence Accession: PF05133.13 Description: Phage_prot_Gp6 ; Phage portal protein, SPP1 Gp6-like Query Range: (10-438) Target Range: (3-416) at 2018-11-30 08:12:39.0
leahdowell changed the gene function to portal protein at 2018-11-30 08:12:39.0

Gene Number: 14
dcedwards changed synteny to This gene is among several structural genes coded together. Occurs upstream of capsid proteins. at 2019-02-07 22:30:08.0
faith changed starterator analysis to SS at 2019-01-31 16:24:18.0
dcedwards changed synteny to This gene is among several structural genes coded together. at 2019-01-31 15:37:59.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 05:43:51.0
dcedwards changed note to  at 2019-01-31 05:43:51.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:35:12.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:11:45.0
bristerpostma Added Phages DB Evidence Phage Name: Trouble Function: capsid maturation protease at 2018-11-30 15:11:45.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008409745 Query Range: (1-293) Target Range: (1-293) at 2018-11-30 14:56:04.0
bristerpostma changed the gene function to capsid maturation protease at 2018-11-30 14:56:04.0
bristerpostma changed note to capsid maturation protease [Mycobacterium phage Trouble] >gi|529678502|gb|AGT12527.1| capsid maturation protease [Mycobacterium phage Trouble] at 2018-11-30 14:56:04.0
reanna changed note to Trying to determine whether minor capsid protein or a protease. at 2018-10-23 06:49:44.0
reanna Added HHPRED Evidence Accession: PF06152.10 Description: Phage_min_cap2 ; Phage minor capsid protein 2 Query Range: (112-225) Target Range: (199-298) at 2018-10-23 06:48:28.0

Gene Number: 15
dcedwards changed synteny to This gene is among several structural genes coded together. This pham commonly called scaffolding protein. at 2019-02-07 22:31:03.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_002223955 Query Range: (1-170) Target Range: (1-170) at 2019-02-02 16:17:00.0
faith changed starterator analysis to SS at 2019-01-31 16:24:46.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:38:16.0
dcedwards changed synteny to This gene is among several structural genes coded together. at 2019-01-31 15:38:16.0
dcedwards Added Phages DB Evidence Phage Name: Blue Function: scaffolding protein at 2019-01-31 05:45:06.0
dcedwards Added HHPRED Evidence Accession: PF14265.5 Description: DUF4355 ; Domain of unknown function (DUF4355) Query Range: (31-133) Target Range: (1-114) at 2019-01-31 05:45:06.0
dcedwards changed the gene function to scaffolding protein at 2019-01-31 05:45:06.0
dcedwards changed synteny to  at 2019-01-31 05:45:06.0
faith Added NCBI BLAST Evidence Accession: APQ42370 Query Range: (1-170) Target Range: (1-170) at 2018-11-30 11:01:48.0
faith Added NCBI BLAST Evidence Accession: YP_002223955 Query Range: (1-170) Target Range: (1-170) at 2018-11-30 11:01:48.0
faith changed the gene function to Scaffolding protein at 2018-11-30 11:01:48.0
faith changed synteny to Protein used in cell signaling. at 2018-11-30 11:01:48.0

Gene Number: 16
dcedwards changed synteny to Located after the portal protein and capsid maturation protease, and is close to other structural genes in the genome. This pham is commonly called major capsid protein. at 2019-02-07 22:35:14.0
dcedwards changed synteny to Located after the portal protein and capsid maturation protease, and is close to other structural genes in the genome. This pham is commonly called major capsid protein/ at 2019-02-07 22:35:04.0
dcedwards Removed CDD Evidence Accession: pfam05065 Query Range: (27-328) Target Range: (4-275) at 2019-02-02 16:17:59.0
dcedwards Removed NCBI BLAST Evidence Accession: AMD43012 Query Range: (1-332) Target Range: (1-332) at 2019-02-02 16:17:59.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001994747 Query Range: (1-332) Target Range: (1-332) at 2019-02-02 16:17:59.0
dcedwards Removed HHPRED Evidence Accession: 1OHG_E Description: MAJOR CAPSID PROTEIN; VIRUS, VIRUS COAT PROTEIN, VIRUS/VIRAL; 3.45A {BACTERIOPHAGE HK97} SCOP: d.183.1.1 Query Range: (15-330) Target Range: (3-280) at 2019-02-02 16:17:59.0
faith changed starterator analysis to SS at 2019-01-31 16:25:34.0
dcedwards changed synteny to A structural protein which is close to other structural genes in the genome. at 2019-01-31 15:38:33.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: major capsid protein at 2019-01-31 05:46:13.0
dcedwards Removed Phages DB Evidence Phage Name: Solon Function: capsid protein at 2019-01-31 05:46:13.0
dcedwards Removed Phages DB Evidence Phage Name: Dynamix Function: capsid protein at 2019-01-31 05:46:13.0
dcedwards Removed Phages DB Evidence Phage Name: Lockley Function: capsid protein at 2019-01-31 05:46:13.0
dcedwards Added CDD Evidence Accession: pfam05065 Query Range: (27-328) Target Range: (4-275) at 2019-01-31 05:46:13.0
dcedwards Added CDD Evidence Accession: TIGR01554 Query Range: (27-325) Target Range: (116-383) at 2019-01-31 05:46:13.0
dcedwards changed the gene function to major capsid protein at 2019-01-31 05:46:13.0
tiffanylujan changed synteny to A structural protein which is close to other structural genes in the genome at 2018-12-01 12:45:15.0
tiffanylujan Added Phages DB Evidence Phage Name: Solon Function: capsid protein at 2018-12-01 12:44:38.0
tiffanylujan Added Phages DB Evidence Phage Name: Dynamix Function: capsid protein at 2018-12-01 12:44:38.0
tiffanylujan Added Phages DB Evidence Phage Name: Lockley Function: capsid protein at 2018-12-01 12:44:38.0
tiffanylujan Removed Phages DB Evidence Phage Name: Turj99 Function: major capsid protein at 2018-12-01 12:44:38.0
tiffanylujan Removed Phages DB Evidence Phage Name: SwissCheese Function: major capsid protein at 2018-12-01 12:44:38.0
tiffanylujan Removed CDD Evidence Accession: pfam05065 Query Range: (27-328) Target Range: (4-275) at 2018-12-01 12:44:38.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AEJ92903 Query Range: (1-332) Target Range: (1-332) at 2018-12-01 12:44:38.0
tiffanylujan Removed NCBI BLAST Evidence Accession: APQ42371 Query Range: (1-332) Target Range: (1-332) at 2018-12-01 12:44:38.0
tiffanylujan Added HHPRED Evidence Accession: 3JB5_B Description: major capsid protein; acne, bacteriophage, HK97-like, VIRUS; 3.7A {Propionibacterium phage PA6} Query Range: (21-332) Target Range: (6-307) at 2018-12-01 12:44:38.0
tiffanylujan Added HHPRED Evidence Accession: 1OHG_E Description: MAJOR CAPSID PROTEIN; VIRUS, VIRUS COAT PROTEIN, VIRUS/VIRAL; 3.45A {BACTERIOPHAGE HK97} SCOP: d.183.1.1 Query Range: (15-330) Target Range: (3-280) at 2018-12-01 12:44:38.0
tiffanylujan Added CDD Evidence Accession: pfam05065 Query Range: (27-328) Target Range: (4-275) at 2018-11-30 08:44:24.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_002223956 Query Range: (1-332) Target Range: (1-332) at 2018-11-30 08:44:07.0
tiffanylujan Added NCBI BLAST Evidence Accession: AMD43012 Query Range: (1-332) Target Range: (1-332) at 2018-11-30 08:44:07.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_001994747 Query Range: (1-332) Target Range: (1-332) at 2018-11-30 08:44:07.0
tiffanylujan Added NCBI BLAST Evidence Accession: AEJ92903 Query Range: (1-332) Target Range: (1-332) at 2018-11-30 08:44:07.0
tiffanylujan Added NCBI BLAST Evidence Accession: APQ42371 Query Range: (1-332) Target Range: (1-332) at 2018-11-30 08:44:07.0
tiffanylujan changed the gene function to Major capsid protein at 2018-11-30 08:43:43.0
tiffanylujan changed synteny to A structural protein at 2018-11-30 08:43:36.0
tiffanylujan Added Phages DB Evidence Phage Name: Turj99 Function: major capsid protein at 2018-11-30 08:38:17.0
tiffanylujan Added Phages DB Evidence Phage Name: SwissCheese Function: major capsid protein at 2018-11-30 08:38:17.0
tiffanylujan Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 08:38:17.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 08:35:15.0
brendansibley changed the gene function to major capsid protein at 2018-10-23 06:44:15.0
brendansibley Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-10-23 06:29:24.0

Gene Number: 17
faith changed starterator analysis to SS at 2019-01-31 16:35:07.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:39:02.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: function unknown at 2019-01-31 05:46:55.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491667 Query Range: (1-78) Target Range: (1-78) at 2019-01-31 05:46:55.0
dcedwards changed the gene function to NKF at 2019-01-31 05:46:55.0
hsmith Added HHPRED Evidence Accession: cd14725 Description: ZIP_Gal4-like_2; Leucine zipper Dimerization coil of Gal4-like transcription factors. The Gal4p family of transcriptional activators contain an N-terminal DNA-binding domain with a Zn2Cys6 binuclear cluster that interact with CCG triplets and a leucine zipper-like heptad repeat that dimerizes. Query Range: (56-72) Target Range: (8-24) at 2018-10-23 06:41:06.0

Gene Number: 18
dcedwards Removed Phages DB Evidence Phage Name: ILeeKay Function: head-to-tail connector protein at 2019-02-02 16:18:54.0
dcedwards Removed HHPRED Evidence Accession: 3JVO_K Description: Gp6; 13-membered ring, VIRAL PROTEIN; HET: MPD; 2.1A {Enterobacteria phage HK97} Query Range: (1-73) Target Range: (6-76) at 2019-02-02 16:18:54.0
faith changed starterator analysis to SS at 2019-01-31 16:35:49.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:43:52.0
dcedwards changed synteny to Has HHpred alignment to crystal structure of HK97 gp6 at 2019-01-31 15:42:18.0
dcedwards changed synteny to Has HHpredalignment to crystal structure of HK97 gp6 at 2019-01-31 15:42:11.0
dcedwards Added HHPRED Evidence Accession: cd08051 Description: gp6_gp15_like; Head-Tail Connector Proteins gp6 and gp15, and similar proteins. Members of this family include the proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. Query Range: (7-86) Target Range: (1-78) at 2019-01-31 05:52:11.0
dcedwards Added HHPRED Evidence Accession: 3JVO_K Description: Gp6; 13-membered ring, VIRAL PROTEIN; HET: MPD; 2.1A {Enterobacteria phage HK97} Query Range: (1-73) Target Range: (6-76) at 2019-01-31 05:52:11.0
dcedwards Removed HHPRED Evidence Accession: cd08053 Description: Yqbg; Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins. Query Range: (1-111) Target Range: (1-115) at 2019-01-31 05:52:11.0
dcedwards Removed HHPRED Evidence Accession: PF05135.12 Description: Phage_connect_1 ; Phage gp6-like head-tail connector protein Query Range: (3-86) Target Range: (1-97) at 2019-01-31 05:52:11.0
dcedwards Added CDD Evidence Accession: pfam09355 Query Range: (13-116) Target Range: (1-115) at 2019-01-31 05:47:29.0
dcedwards Added NCBI BLAST Evidence Accession: ATN89358 Query Range: (1-149) Target Range: (1-149) at 2019-01-31 05:47:29.0
leahdowell changed synteny to structural protein that connects the head to the tail at 2018-11-30 09:35:14.0
leahdowell Added Phages DB Evidence Phage Name: ILeeKay Function: head-to-tail connector protein at 2018-11-30 08:17:49.0
leahdowell Added Phages DB Evidence Phage Name: Smeagol Function: head-to-tail connector complex protein at 2018-11-30 08:17:49.0
leahdowell Added HHPRED Evidence Accession: cd08053 Description: Yqbg; Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins. Query Range: (1-111) Target Range: (1-115) at 2018-11-30 08:17:49.0
leahdowell Added HHPRED Evidence Accession: PF05135.12 Description: Phage_connect_1 ; Phage gp6-like head-tail connector protein Query Range: (3-86) Target Range: (1-97) at 2018-11-30 08:17:49.0
leahdowell changed the gene function to head-to-tail connector complex protein at 2018-11-30 08:17:49.0

Gene Number: 19
faith changed starterator analysis to SS at 2019-01-31 16:36:23.0
dcedwards changed synteny to Located together with other structural protein genes. at 2019-01-31 15:42:58.0
dcedwards Added Phages DB Evidence Phage Name: Acme Function: head-to-tail connector complex protein at 2019-01-31 05:50:03.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 05:50:03.0
dcedwards Removed Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2019-01-31 05:50:03.0
dcedwards changed note to  at 2019-01-31 05:50:03.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:34:59.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:10:53.0
bristerpostma Added Phages DB Evidence Phage Name: Tripl3t_Draft Function: function unknown at 2018-11-30 15:10:53.0
bristerpostma Added NCBI BLAST Evidence Accession: AVP42508 Query Range: (1-105) Target Range: (16-120) at 2018-11-30 15:10:53.0
bristerpostma Added HHPRED Evidence Accession: PF10665.8 Description: Minor_capsid_1 ; Minor capsid protein Query Range: (8-102) Target Range: (17-106) at 2018-11-30 15:10:53.0
bristerpostma Removed HHPRED Evidence Accession: PF12206.7 Description: DUF3599 ; Domain of unknown function (DUF3599) Query Range: (7-105) Target Range: (22-115) at 2018-11-30 15:10:53.0
bristerpostma changed the gene function to minor capsid protein at 2018-11-30 15:10:53.0
bristerpostma changed note to Minor_capsid_1 ; Minor capsid protein at 2018-11-30 15:10:53.0
bristerpostma Added HHPRED Evidence Accession: PF12206.7 Description: DUF3599 ; Domain of unknown function (DUF3599) Query Range: (7-105) Target Range: (22-115) at 2018-11-30 15:04:51.0
bristerpostma changed the gene function to unkown function at 2018-11-30 15:04:51.0
bristerpostma changed note to DUF3599 ; Domain of unknown function (DUF3599) at 2018-11-30 15:04:51.0
bristerpostma changed the gene function to minor capsid protein at 2018-11-30 15:01:10.0
bristerpostma changed note to Minor_capsid_1 ; Minor capsid protein at 2018-11-30 15:01:10.0

Gene Number: 20
dcedwards changed synteny to Has HHpred alignment to crystal structure of HK97 gp10 and NOT gp6 at 2019-02-07 22:38:26.0
dcedwards Removed HHPRED Evidence Accession: PF04883.11 Description: HK97-gp10_like ; Bacteriophage HK97-gp10, putative tail-component Query Range: (11-84) Target Range: (1-73) at 2019-02-02 16:19:35.0
dcedwards changed synteny to  at 2019-01-31 17:21:01.0
faith changed starterator analysis to SS at 2019-01-31 16:37:02.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:55:38.0
dcedwards Added Phages DB Evidence Phage Name: BillKnuckles Function: function unknown at 2019-01-31 15:53:16.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 05:53:54.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075284 Query Range: (1-131) Target Range: (1-131) at 2019-01-31 05:53:54.0
dcedwards Added HHPRED Evidence Accession: PF04883.11 Description: HK97-gp10_like ; Bacteriophage HK97-gp10, putative tail-component Query Range: (11-84) Target Range: (1-73) at 2019-01-31 05:53:54.0
dcedwards changed the gene function to NKF at 2019-01-31 05:53:54.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 11:16:45.0
faith Added HHPRED Evidence Accession: PF17395.1 Description: DUF5403 ; Family of unknown function (DUF5403) Query Range: (1-112) Target Range: (1-92) at 2018-11-30 11:16:45.0
faith changed the gene function to Unknown at 2018-11-30 11:16:45.0
faith changed synteny to Hypothetical protein of unknown function. at 2018-11-30 11:16:45.0

Gene Number: 21
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: function unknown at 2019-02-07 22:41:53.0
dcedwards Removed Phages DB Evidence Phage Name: Pippin Function: head-to-tail connector complex protein at 2019-02-07 22:41:53.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009291259 Query Range: (1-148) Target Range: (1-148) at 2019-02-02 16:19:57.0
faith changed starterator analysis to SS at 2019-01-31 16:45:05.0
dcedwards Removed Phages DB Evidence Phage Name: Gompeii16 Function: head-to-tail connector protein at 2019-01-31 06:07:57.0
dcedwards changed the gene function to NKF at 2019-01-31 06:07:57.0
dcedwards changed synteny to Although it aligns with portal and other proteins, it is not HK97 gp6 or or Bacillus protein yqb at 2019-01-31 06:07:57.0
tiffanylujan Added Phages DB Evidence Phage Name: Pippin Function: head-to-tail connector complex protein at 2018-12-01 12:48:22.0
tiffanylujan Added Phages DB Evidence Phage Name: Gompeii16 Function: head-to-tail connector protein at 2018-12-01 12:48:22.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX81767 Query Range: (1-148) Target Range: (1-148) at 2018-12-01 12:48:22.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009291259 Query Range: (1-148) Target Range: (1-148) at 2018-12-01 12:48:22.0
tiffanylujan Added HHPRED Evidence Accession: 5A21_G Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, VIRAL INFECTION, TAILED; 7.2A {BACILLUS PHAGE SPP1} Query Range: (1-145) Target Range: (3-133) at 2018-12-01 12:48:22.0
tiffanylujan changed synteny to structural protein that connects the head to the tail which is near other structural genes in the genome. at 2018-12-01 12:48:22.0
leahdowell Added Phages DB Evidence Phage Name: Gompeii16 Function: head-to-tail connector protein at 2018-11-30 09:58:06.0
leahdowell Added Phages DB Evidence Phage Name: Bircsak Function: head-to-tail connector protein at 2018-11-30 09:58:06.0
leahdowell Removed Phages DB Evidence Phage Name: Smairt Function: head-to-tail connector protein at 2018-11-30 09:58:06.0
leahdowell Removed Phages DB Evidence Phage Name: Sibs6 Function: Head-to-tail connector complex protein at 2018-11-30 09:58:06.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009291256 Query Range: (1-149) Target Range: (1-149) at 2018-11-30 09:58:06.0
leahdowell Added NCBI BLAST Evidence Accession: APQ42373 Query Range: (1-149) Target Range: (1-149) at 2018-11-30 09:58:06.0
leahdowell Added NCBI BLAST Evidence Accession: AUX81764 Query Range: (1-149) Target Range: (1-149) at 2018-11-30 09:58:06.0
leahdowell Removed NCBI BLAST Evidence Accession: AUX81767 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 09:58:06.0
leahdowell Removed NCBI BLAST Evidence Accession: YP_009291259 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 09:58:06.0
leahdowell Removed NCBI BLAST Evidence Accession: YP_009205058 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 09:58:06.0
leahdowell Added HHPRED Evidence Accession: PF09355.9 Description: Phage_Gp19 ; Phage protein Gp19/Gp15/Gp42 Query Range: (13-117) Target Range: (1-116) at 2018-11-30 09:58:06.0
leahdowell Added HHPRED Evidence Accession: cd08053 Description: Yqbg; Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins. Query Range: (1-107) Target Range: (1-109) at 2018-11-30 09:58:06.0
leahdowell Removed HHPRED Evidence Accession: 2LFP_A Description: Bacteriophage SPP1 complete nucleotide sequence; VIRAL PROTEIN; NMR {Bacillus phage SPP1} Query Range: (1-147) Target Range: (6-138) at 2018-11-30 09:58:06.0
leahdowell Removed HHPRED Evidence Accession: 5A21_G Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, VIRAL INFECTION, TAILED; 7.2A {BACILLUS PHAGE SPP1} Query Range: (1-145) Target Range: (3-133) at 2018-11-30 09:58:06.0
leahdowell changed synteny to structural protein that connects the head to the tail at 2018-11-30 09:58:06.0
tiffanylujan changed synteny to Protein that connects the different structures at 2018-11-30 09:03:00.0
tiffanylujan changed the gene function to head-to-tail connector complex protein at 2018-11-30 08:59:15.0
tiffanylujan Added NCBI BLAST Evidence Accession: AUX81767 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 08:58:13.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009291259 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 08:58:13.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009205058 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 08:58:13.0
tiffanylujan Added Phages DB Evidence Phage Name: Smairt Function: head-to-tail connector protein at 2018-11-30 08:55:58.0
tiffanylujan Added Phages DB Evidence Phage Name: Sibs6 Function: Head-to-tail connector complex protein at 2018-11-30 08:55:58.0
tiffanylujan Added HHPRED Evidence Accession: 2LFP_A Description: Bacteriophage SPP1 complete nucleotide sequence; VIRAL PROTEIN; NMR {Bacillus phage SPP1} Query Range: (1-147) Target Range: (6-138) at 2018-11-30 08:55:24.0
tiffanylujan Added HHPRED Evidence Accession: 5A21_G Description: PORTAL PROTEIN, 15 PROTEIN, HEAD; VIRAL PROTEIN, VIRAL INFECTION, TAILED; 7.2A {BACILLUS PHAGE SPP1} Query Range: (1-145) Target Range: (3-133) at 2018-11-30 08:55:24.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 08:47:22.0

Gene Number: 22
dcedwards changed synteny to Well characterized pham for major tail protein. Is located in appropriate position in the genome. at 2019-02-07 22:45:14.0
dcedwards Removed Phages DB Evidence Phage Name: Aeneas Function: major tail subunit at 2019-02-02 16:20:16.0
faith changed starterator analysis to SS at 2019-01-31 16:46:34.0
dcedwards changed the coding capacity to yes at 2019-01-31 15:54:59.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: major tail subunit at 2019-01-31 06:09:09.0
dcedwards Added Phages DB Evidence Phage Name: ILeeKay Function: major tail protein at 2019-01-31 06:09:09.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008530999 Query Range: (1-282) Target Range: (1-282) at 2019-01-31 06:09:09.0
dcedwards changed the gene function to major tail protein at 2019-01-31 06:09:09.0
morphew99 Added HHPRED Evidence Accession: PF04630.11 Description: Phage_TTP_1 ; Phage tail tube protein Query Range: (56-175) Target Range: (41-163) at 2018-11-06 05:30:58.0
morphew99 changed the gene function to Phage tail tube protein at 2018-11-06 05:30:58.0

Gene Number: 23
dcedwards Removed Phages DB Evidence Phage Name: Nerujay Function: tail assembly chaperone at 2019-02-02 16:20:40.0
faith changed the coding capacity to yes at 2019-01-31 16:47:23.0
faith changed starterator analysis to SS at 2019-01-31 16:47:23.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009013668 Query Range: (1-125) Target Range: (1-125) at 2019-01-31 06:10:40.0
dcedwards changed synteny to Mediates assembly of the bacteriophage tail. Part of two genes with a translational frameshift. Upstream of tapemeasure gene. at 2019-01-31 06:10:40.0
leahdowell changed synteny to mediates assembly of the bacteriophage tail at 2018-11-30 09:37:27.0
gracenordley Added Phages DB Evidence Phage Name: Nerujay Function: tail assembly chaperone at 2018-10-23 06:22:21.0
gracenordley Added Phages DB Evidence Phage Name: JC27 Function: tail assembly chaperone at 2018-10-23 06:22:21.0
gracenordley Added HHPRED Evidence Accession: PF17388.1 Description: GP24_25 ; Tail assembly protein Gp24 and Gp25 Query Range: (1-123) Target Range: (1-130) at 2018-10-23 06:22:21.0
gracenordley changed the gene function to tail assembly chaperone at 2018-10-23 06:22:21.0

Gene Number: 24
dcedwards Added Phages DB Evidence Phage Name: Bircsak Function: tail assembly chaperone at 2019-01-31 06:11:36.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 06:11:36.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009291261 Query Range: (1-70) Target Range: (197-266) at 2019-01-31 06:11:36.0
dcedwards changed the gene function to tail assembly chaperone at 2019-01-31 06:11:36.0
dcedwards changed note to  at 2019-01-31 06:11:36.0
dcedwards changed synteny to Part of two genes with translational frameshift. Upstream of tapemeasure gene. at 2019-01-31 06:11:36.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:34:09.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:09:04.0
bristerpostma Added HHPRED Evidence Accession: PF17318.1 Description: DUF5361 ; Family of unknown function (DUF5361) Query Range: (1-34) Target Range: (54-82) at 2018-11-30 15:05:58.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:05:58.0
bristerpostma changed note to DUF5361 ; Family of unknown function (DUF5361) at 2018-11-30 15:05:58.0
jnowell5801 changed starterator analysis to SS at 2018-10-23 06:16:32.0

Gene Number: 25
faith changed the coding capacity to yes at 2019-01-31 16:50:12.0
faith changed starterator analysis to SS at 2019-01-31 16:50:12.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 06:12:10.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 11:49:03.0
faith Added Phages DB Evidence Phage Name: ILeeKay Function: tapemeasure protein at 2018-11-30 11:49:03.0
faith Added NCBI BLAST Evidence Accession: ATN89365 Query Range: (1-826) Target Range: (1-826) at 2018-11-30 11:49:03.0
faith changed the gene function to tape measure protein at 2018-11-30 11:49:03.0
faith changed note to Probaby a tape meassure protein; when analyzed on HHPRED it was a viral structural protein five. at 2018-11-30 11:49:03.0
faith changed synteny to Gene is in roughly the same spot as the tape measure proteins of the other closely related viruses. at 2018-11-30 11:49:03.0

Gene Number: 26
dcedwards Removed Phages DB Evidence Phage Name: Zephyr Function: minor tail protein at 2019-02-02 16:22:06.0
dcedwards Removed Phages DB Evidence Phage Name: MPlant7149 Function: minor tail protein at 2019-02-02 16:22:06.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ50405 Query Range: (1-685) Target Range: (1-685) at 2019-02-02 16:22:06.0
dcedwards Removed NCBI BLAST Evidence Accession: APQ42039 Query Range: (1-685) Target Range: (1-685) at 2019-02-02 16:22:06.0
dcedwards Removed HHPRED Evidence Accession: 2X8K_C Description: HYPOTHETICAL PROTEIN 19.1; VIRAL PROTEIN, DISTAL TAIL PROTEIN; 2.95A {BACILLUS PHAGE SPP1} Query Range: (33-216) Target Range: (24-176) at 2019-02-02 16:22:06.0
faith changed starterator analysis to SS at 2019-01-31 16:52:54.0
dcedwards changed synteny to In cluster A1, there are a set of minor tail proteins downstream of tape measure protein. Should be larger genes ~1,000+ bp. at 2019-01-31 16:08:29.0
dcedwards changed synteny to In cluster A1, there are 5 minor tail proteins downstream of tape measure protein. at 2019-01-31 15:56:45.0
tiffanylujan Added Phages DB Evidence Phage Name: MPlant7149 Function: minor tail protein at 2018-12-01 12:49:35.0
tiffanylujan Added Phages DB Evidence Phage Name: Zephyr Function: minor tail protein at 2018-12-01 12:49:35.0
tiffanylujan Removed Phages DB Evidence Phage Name: Rohr Function: minor tail protein at 2018-12-01 12:49:35.0
tiffanylujan Removed Phages DB Evidence Phage Name: BigMau Function: minor tail protein at 2018-12-01 12:49:35.0
tiffanylujan Added NCBI BLAST Evidence Accession: APQ42039 Query Range: (1-685) Target Range: (1-685) at 2018-12-01 12:49:35.0
tiffanylujan changed synteny to Protein essential for tail essembly near other structural genes in the genome. at 2018-12-01 12:49:35.0
tiffanylujan Added HHPRED Evidence Accession: 2X8K_C Description: HYPOTHETICAL PROTEIN 19.1; VIRAL PROTEIN, DISTAL TAIL PROTEIN; 2.95A {BACILLUS PHAGE SPP1} Query Range: (33-216) Target Range: (24-176) at 2018-11-30 09:10:04.0
tiffanylujan changed synteny to Protein essential for tail essembly at 2018-11-30 09:09:50.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVJ49131 Query Range: (1-685) Target Range: (1-685) at 2018-11-30 09:05:04.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVJ50405 Query Range: (1-685) Target Range: (1-685) at 2018-11-30 09:05:04.0
tiffanylujan Added Phages DB Evidence Phage Name: Rohr Function: minor tail protein at 2018-11-30 09:04:46.0
tiffanylujan Added Phages DB Evidence Phage Name: Bob3 Function: minor tail protein at 2018-11-30 09:04:46.0
tiffanylujan Added Phages DB Evidence Phage Name: BigMau Function: minor tail protein at 2018-11-30 09:04:46.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:04:29.0
elizabethbloodworth Added HHPRED Evidence Accession: PF05709.10 Description: Sipho_tail ; Phage tail protein Query Range: (34-216) Target Range: (1-152) at 2018-10-23 06:45:23.0
elizabethbloodworth changed the gene function to minor tail protein at 2018-10-23 06:45:23.0
elizabethbloodworth changed the start site to 19391 at 2018-10-23 06:23:48.0
elizabethbloodworth changed the start site to 21128 at 2018-10-23 06:20:01.0

Gene Number: 27
dcedwards Added HHPRED Evidence Accession: 4HR6_A Description: LECTIN; Type II RIP, Lectin, Beta-Trefoil; HET: AMG; 2.25A {Trichosanthes anguina} Query Range: (4-13) Target Range: (28-37) at 2019-02-02 16:22:31.0
faith changed the coding capacity to yes at 2019-01-31 16:53:57.0
faith changed starterator analysis to SS at 2019-01-31 16:53:57.0
dcedwards changed the gene function to NKF at 2019-01-31 16:10:40.0
dcedwards changed note to Possibly too small for minor tail protein. at 2019-01-31 16:10:40.0
dcedwards changed synteny to In cluster A1, there are a set of minor tail proteins downstream of tape measure protein. Should be larger genes ~1,000+ bp. This gene is much smaller. at 2019-01-31 16:10:40.0
dcedwards changed synteny to In cluster A1, there are 5 minor tail proteins downstream of tape measure protein. at 2019-01-31 15:57:21.0
dcedwards Added Phages DB Evidence Phage Name: BeesKnees Function: minor tail protein at 2019-01-31 06:13:12.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008409759 Query Range: (1-60) Target Range: (1-60) at 2019-01-31 06:13:12.0
leahdowell changed synteny to Protein essential for tail assembly at 2018-11-30 10:03:16.0
malloryb changed the gene function to minor tail protein at 2018-10-23 06:44:53.0

Gene Number: 28
dcedwards changed synteny to In cluster A1, there are a set of minor tail proteins downstream of tape measure protein. Should be larger genes ~1,000+ bp. at 2019-02-07 22:59:53.0
dcedwards Removed Phages DB Evidence Phage Name: Zeeculate Function: minor tail protein at 2019-02-02 16:23:07.0
dcedwards Removed HHPRED Evidence Accession: 3CDD_D Description: Prophage MuSo2, 43 kDa tail; MuSo2, Shewanella oneidensis MR-1, Structural; 2.1A {Shewanella oneidensis} SCOP: b.106.1.1 Query Range: (43-567) Target Range: (15-341) at 2019-02-02 16:23:07.0
faith changed starterator analysis to SS at 2019-01-31 16:54:47.0
dcedwards changed synteny to In cluster A1, there are 5 minor tail proteins downstream of tape measure protein. at 2019-01-31 15:57:35.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994759 Query Range: (1-593) Target Range: (8-600) at 2019-01-31 06:14:18.0
leahdowell changed synteny to protein that makes up part of the tail complex at 2018-11-30 09:39:51.0
leahdowell Added Phages DB Evidence Phage Name: Zeeculate Function: minor tail protein at 2018-11-30 08:23:26.0
leahdowell Added Phages DB Evidence Phage Name: Lockley Function: minor tail protein at 2018-11-30 08:23:26.0
leahdowell Added HHPRED Evidence Accession: 3GS9_A Description: Protein gp18; NP_465809.1, prophage tail protein gp18; 1.7A {Listeria monocytogenes EGD-e} Query Range: (29-586) Target Range: (4-341) at 2018-11-30 08:23:26.0
leahdowell Added HHPRED Evidence Accession: 3CDD_D Description: Prophage MuSo2, 43 kDa tail; MuSo2, Shewanella oneidensis MR-1, Structural; 2.1A {Shewanella oneidensis} SCOP: b.106.1.1 Query Range: (43-567) Target Range: (15-341) at 2018-11-30 08:23:26.0
leahdowell changed the gene function to minor tail protein at 2018-11-30 08:23:26.0
hayleeburt changed the coding capacity to yes at 2018-10-23 06:25:05.0

Gene Number: 29
dcedwards changed note to  at 2019-02-07 22:59:25.0
dcedwards Removed Phages DB Evidence Phage Name: Fajezeel Function: minor tail protein at 2019-02-02 16:23:31.0
dcedwards Removed NCBI BLAST Evidence Accession: AVO25452 Query Range: (1-148) Target Range: (1-148) at 2019-02-02 16:23:31.0
faith changed starterator analysis to SS at 2019-01-31 16:56:43.0
dcedwards Added Phages DB Evidence Phage Name: Edtherson Function: function unknown at 2019-01-31 06:15:47.0
dcedwards Added Phages DB Evidence Phage Name: Fajezeel Function: minor tail protein at 2019-01-31 06:15:16.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 06:15:16.0
dcedwards Removed Phages DB Evidence Phage Name: Zephyr Function: minor tail protein at 2019-01-31 06:15:16.0
dcedwards Removed Phages DB Evidence Phage Name: Trouble Function: function unknown at 2019-01-31 06:15:16.0
dcedwards Added NCBI BLAST Evidence Accession: AVO25452 Query Range: (1-148) Target Range: (1-148) at 2019-01-31 06:15:16.0
dcedwards changed the gene function to NKF at 2019-01-31 06:15:16.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:33:02.0
bristerpostma Added Phages DB Evidence Phage Name: Zephyr Function: minor tail protein at 2018-11-30 15:16:59.0
bristerpostma Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 15:16:59.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:16:59.0
bristerpostma Added NCBI BLAST Evidence Accession: NP_075293 Query Range: (1-148) Target Range: (1-148) at 2018-11-30 15:16:59.0
bristerpostma changed note to DUF2744 ; Protein of unknown function (DUF2744)
possible minor tail protein at 2018-11-30 15:16:59.0
bristerpostma Added HHPRED Evidence Accession: PF10910.7 Description: DUF2744 ; Protein of unknown function (DUF2744) Query Range: (3-137) Target Range: (1-125) at 2018-11-30 15:07:27.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:07:27.0
bristerpostma changed note to DUF2744 ; Protein of unknown function (DUF2744) at 2018-11-30 15:07:27.0

Gene Number: 30
dcedwards Removed NCBI BLAST Evidence Accession: YP_001994761 Query Range: (1-110) Target Range: (6-115) at 2019-02-02 16:23:57.0
dcedwards Added HHPRED Evidence Accession: PF09769.8 Description: ApoO ; Apolipoprotein O Query Range: (53-76) Target Range: (63-89) at 2019-02-02 16:23:57.0
faith changed starterator analysis to SS at 2019-01-31 16:59:37.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:14:33.0
dcedwards Added Phages DB Evidence Phage Name: Alsfro Function: minor tail protein at 2019-01-31 06:16:54.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 06:16:54.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994670 Query Range: (1-110) Target Range: (1-110) at 2019-01-31 06:16:54.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994761 Query Range: (1-110) Target Range: (6-115) at 2019-01-31 06:16:54.0
dcedwards changed the gene function to NKF at 2019-01-31 06:16:54.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 11:55:53.0
faith changed the gene function to Unknown at 2018-11-30 11:55:53.0
faith changed note to Unknown protein, however in the closely related phages this is the location of the minor tail protein. at 2018-11-30 11:55:53.0
faith changed synteny to Hypothetical protein of unknown function at 2018-11-30 11:55:53.0

Gene Number: 31
dcedwards Removed NCBI BLAST Evidence Accession: NP_075295 Query Range: (1-115) Target Range: (1-115) at 2019-02-02 16:24:35.0
dcedwards Added HHPRED Evidence Accession: PF06667.11 Description: PspB ; Phage shock protein B Query Range: (4-78) Target Range: (1-66) at 2019-02-02 16:24:35.0
faith changed starterator analysis to SS at 2019-01-31 17:00:58.0
dcedwards changed the gene function to NKF at 2019-01-31 06:17:52.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: minor tail protein at 2019-01-31 06:17:41.0
dcedwards Removed Phages DB Evidence Phage Name: Trouble Function: function unknown at 2019-01-31 06:17:41.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075295 Query Range: (1-115) Target Range: (1-115) at 2019-01-31 06:17:41.0
tiffanylujan Removed Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-12-01 12:50:42.0
tiffanylujan Removed Phages DB Evidence Phage Name: Thor Function: function unknown at 2018-12-01 12:50:42.0
tiffanylujan Removed HHPRED Evidence Accession: PF06295.11 Description: DUF1043 ; Protein of unknown function (DUF1043) Query Range: (14-100) Target Range: (1-74) at 2018-12-01 12:50:42.0
tiffanylujan changed the gene function to Unknown at 2018-12-01 12:50:42.0
tiffanylujan changed the gene function to Function Unknown at 2018-11-30 09:18:51.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:18:51.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008409763 Query Range: (1-115) Target Range: (1-115) at 2018-11-30 09:18:25.0
tiffanylujan Added HHPRED Evidence Accession: PF06295.11 Description: DUF1043 ; Protein of unknown function (DUF1043) Query Range: (14-100) Target Range: (1-74) at 2018-11-30 09:16:33.0
tiffanylujan Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-11-30 09:16:16.0
tiffanylujan Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 09:16:16.0
tiffanylujan Added Phages DB Evidence Phage Name: Thor Function: function unknown at 2018-11-30 09:16:16.0
tiffanylujan Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-11-30 09:13:15.0
tiffanylujan Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 09:13:15.0
tiffanylujan Added Phages DB Evidence Phage Name: Thor Function: function unknown at 2018-11-30 09:13:15.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:11:55.0

Gene Number: 32
dcedwards changed synteny to In cluster A1, there are a set of minor tail proteins downstream of tape measure protein. Should be larger genes ~1,000+ bp. at 2019-02-07 23:00:04.0
dcedwards Removed Phages DB Evidence Phage Name: Aeneas Function: minor tail protein at 2019-02-02 16:25:07.0
dcedwards Added HHPRED Evidence Accession: 2I9N_A Description: MHB4A peptide; BETA-HAIRPIN, ALPHA-HELIX, DE NOVO PROTEIN; NMR {N/A} Query Range: (517-532) Target Range: (2-17) at 2019-02-02 16:25:07.0
faith changed starterator analysis to SS at 2019-01-31 17:06:20.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:15:43.0
dcedwards changed synteny to In cluster A1, there are 5 minor tail proteins downstream of tape measure protein. at 2019-01-31 16:00:32.0
dcedwards Added Phages DB Evidence Phage Name: Bob3 Function: minor tail protein at 2019-01-31 06:18:30.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: minor tail protein at 2019-01-31 06:18:30.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009016298 Query Range: (1-617) Target Range: (1-617) at 2019-01-31 06:18:30.0
dcedwards Added NCBI BLAST Evidence Accession: AVJ49137 Query Range: (1-617) Target Range: (1-617) at 2019-01-31 06:18:30.0
bdeaver changed the gene function to minor tail protein at 2018-10-23 06:45:12.0
bdeaver changed the gene function to HNH endonuclease at 2018-10-23 06:35:15.0

Gene Number: 33
dcedwards changed synteny to In cluster A1, there are a set of minor tail proteins downstream of tape measure protein. Should be larger genes ~1,000+ bp. at 2019-02-07 23:00:13.0
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: D-ala-D-ala-carboxypeptidase at 2019-02-02 16:26:02.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009209422 Query Range: (1-492) Target Range: (1-492) at 2019-02-02 16:26:02.0
dcedwards Removed HHPRED Evidence Accession: 1YQS_A Description: D-alanyl-D-alanine carboxypeptidase (E.C.3.4.16.4); cell well biosynthesis, beta-lactam, beta-sultam; HET: BSA, GOL; 1.05A {Streptomyces sp.} SCOP: e.3.1.1 Query Range: (76-447) Target Range: (1-346) at 2019-02-02 16:26:02.0
faith changed starterator analysis to SS at 2019-01-31 17:08:18.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:00:51.0
dcedwards changed synteny to In cluster A1, there are 5 minor tail proteins downstream of tape measure protein. at 2019-01-31 16:00:45.0
dcedwards Added HHPRED Evidence Accession: 1YQS_A Description: D-alanyl-D-alanine carboxypeptidase (E.C.3.4.16.4); cell well biosynthesis, beta-lactam, beta-sultam; HET: BSA, GOL; 1.05A {Streptomyces sp.} SCOP: e.3.1.1 Query Range: (76-447) Target Range: (1-346) at 2019-01-31 06:19:43.0
dcedwards Added HHPRED Evidence Accession: 1CEF_A Description: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE, CEFOTAXIME GROUP; D-AMINO ACID PEPTIDASE, PENICILLIN TARGET; HET: CEF; 2.04A {Streptomyces sp.} SCOP: e.3.1.1 Query Range: (76-447) Target Range: (1-346) at 2019-01-31 06:19:43.0
leahdowell changed synteny to Part of the tail complex at 2018-11-30 09:42:46.0
leahdowell Added Phages DB Evidence Phage Name: Perseus Function: carboxypeptidase at 2018-11-30 08:27:39.0
leahdowell Added Phages DB Evidence Phage Name: Abrogate Function: D-ala-D-ala-carboxypeptidase at 2018-11-30 08:27:39.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009209422 Query Range: (1-492) Target Range: (1-492) at 2018-11-30 08:27:39.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009016020 Query Range: (1-492) Target Range: (1-492) at 2018-11-30 08:27:39.0
leahdowell changed the gene function to minor tail protein, D-ala-D-ala carboxypeptidase at 2018-11-30 08:27:39.0

Gene Number: 34
dcedwards changed note to  at 2019-01-31 17:21:35.0
faith changed starterator analysis to SS at 2019-01-31 17:08:56.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:00:50.0
dcedwards Removed Phages DB Evidence Phage Name: Trouble Function: function unknown at 2019-01-31 11:00:50.0
dcedwards changed the gene function to NKF at 2019-01-31 11:00:50.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:31:44.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:18:15.0
bristerpostma Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 15:18:15.0
bristerpostma Added Phages DB Evidence Phage Name: Switzer Function: function unknown at 2018-11-30 15:18:15.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_008050800 Query Range: (1-106) Target Range: (2-107) at 2018-11-30 15:18:15.0
bristerpostma Added HHPRED Evidence Accession: 2N37_A Description: AVR-Pia protein; UNKNOWN FUNCTION; NMR {Magnaporthe oryzae} Query Range: (58-97) Target Range: (3-41) at 2018-11-30 15:18:15.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:18:15.0
bristerpostma changed note to Protein of unknown function at 2018-11-30 15:18:15.0

Gene Number: 35
dcedwards changed note to  at 2019-01-31 17:21:49.0
dcedwards changed synteny to  at 2019-01-31 17:21:49.0
faith changed starterator analysis to SS at 2019-01-31 17:10:06.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:01:38.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008531012 Query Range: (1-63) Target Range: (1-63) at 2019-01-31 11:01:38.0
dcedwards Added HHPRED Evidence Accession: 3TR7_A Description: Uracil-DNA glycosylase (E.C.3.2.2.27); DNA metabolism, HYDROLASE; 2.1958A {Coxiella burnetii} Query Range: (1-62) Target Range: (7-66) at 2019-01-31 11:01:38.0
dcedwards changed the gene function to NKF at 2019-01-31 11:01:38.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:30:13.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 12:03:10.0
faith Added Phages DB Evidence Phage Name: PhrostyMug Function: function unknown at 2018-11-30 12:03:10.0
faith changed the gene function to Unknown at 2018-11-30 12:03:10.0
faith changed note to Protein of unknown function; did not have a closer than 58% match on HHpred. Function is also unknown in closely related phages. at 2018-11-30 12:03:10.0
faith changed synteny to Hypothetical protein of unknown function at 2018-11-30 12:03:10.0

Gene Number: 36
dcedwards changed synteny to  at 2019-01-31 17:22:01.0
faith changed starterator analysis to SS at 2019-01-31 17:12:45.0
dcedwards Added HHPRED Evidence Accession: PF11609.7 Description: DUF3248 ; Protein of unknown function (DUF3248) Query Range: (310-319) Target Range: (56-65) at 2019-01-31 11:02:08.0
dcedwards changed the gene function to NKF at 2019-01-31 11:01:54.0
tiffanylujan Removed Phages DB Evidence Phage Name: Traft412_Draft Function: function unknown at 2018-12-01 12:51:44.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AFL46540 Query Range: (1-319) Target Range: (1-319) at 2018-12-01 12:51:44.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:24:58.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008409768 Query Range: (1-319) Target Range: (1-319) at 2018-11-30 09:24:49.0
tiffanylujan Added NCBI BLAST Evidence Accession: AFL46540 Query Range: (1-319) Target Range: (1-319) at 2018-11-30 09:24:49.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 09:24:49.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:24:49.0
tiffanylujan Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 09:23:21.0
tiffanylujan Added Phages DB Evidence Phage Name: Traft412_Draft Function: function unknown at 2018-11-30 09:23:21.0
cmorgan changed the gene function to minor tail protein, D-ala-D-ala carboxypeptidase at 2018-11-06 05:15:59.0

Gene Number: 37
faith changed the coding capacity to yes at 2019-01-31 17:19:17.0
faith changed starterator analysis to SS at 2019-01-31 17:19:17.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:02:52.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994768 Query Range: (1-94) Target Range: (1-94) at 2019-01-31 11:02:52.0
dcedwards Added HHPRED Evidence Accession: 2A3M_A Description: COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme; Desulfovibrio, tetraheme cytochrome, cytochrome c3; HET: HEM; 1.5A {Desulfovibrio desulfuricans subsp. desulfuricans str.} Query Range: (1-27) Target Range: (1-27) at 2019-01-31 11:02:52.0
dcedwards changed the gene function to NKF at 2019-01-31 11:02:52.0

Gene Number: 38
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: integrase at 2019-02-02 16:28:18.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009209427 Query Range: (1-500) Target Range: (1-500) at 2019-02-02 16:28:18.0
dcedwards changed synteny to In pham with Bxb1 gene 35, which is a serine inetgrase. at 2019-01-31 17:23:37.0
faith changed the coding capacity to yes at 2019-01-31 17:20:34.0
faith changed starterator analysis to SS at 2019-01-31 17:20:34.0
leahdowell changed synteny to integration of the phage into the host genome at 2018-11-30 09:44:33.0
leahdowell changed the gene function to integrase, (S-int) at 2018-11-30 08:30:34.0
leahdowell Added Phages DB Evidence Phage Name: Lesedi Function: serine integrase at 2018-11-30 08:30:15.0
leahdowell Added Phages DB Evidence Phage Name: Abrogate Function: integrase at 2018-11-30 08:30:15.0
leahdowell Added CDD Evidence Accession: cd00338 Query Range: (7-144) Target Range: (3-137) at 2018-11-30 08:30:15.0
leahdowell Added NCBI BLAST Evidence Accession: AEK09332 Query Range: (1-500) Target Range: (1-500) at 2018-11-30 08:30:15.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009209427 Query Range: (1-500) Target Range: (1-500) at 2018-11-30 08:30:15.0
leahdowell Added HHPRED Evidence Accession: 4BQQ_A Description: INTEGRASE; HYDROLASE, SERINE RECOMBINASE, UNIDIRECTIONAL, SITE-SPECIFIC; 2.15A {STREPTOMYCES PHAGE PHIC31} Query Range: (1-310) Target Range: (28-396) at 2018-11-30 08:30:15.0
leahdowell changed the gene function to inte at 2018-11-30 08:30:15.0

Gene Number: 39
dcedwards Removed Phages DB Evidence Phage Name: PhrostyMug Function: function unknown at 2019-02-02 16:28:40.0
dcedwards changed note to  at 2019-01-31 17:23:48.0
faith changed starterator analysis to SS at 2019-01-31 17:22:08.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:04:32.0
dcedwards changed the gene function to NKF at 2019-01-31 11:04:32.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:27:42.0
bristerpostma Added HHPRED Evidence Accession: 4ICG_B Description: Global DNA-binding transcriptional dual regulator; DNA binding protein, Hha; HET: MSE; 2.9217A {Salmonella enterica subsp. enterica serovar Typhimurium str. LT2} Query Range: (7-26) Target Range: (19-38) at 2018-11-30 15:26:50.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:25:47.0
bristerpostma Added Phages DB Evidence Phage Name: RidgeCB Function: function unknown at 2018-11-30 15:25:47.0
bristerpostma Added Phages DB Evidence Phage Name: PhrostyMug Function: function unknown at 2018-11-30 15:25:47.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009209428 Query Range: (4-111) Target Range: (3-110) at 2018-11-30 15:25:47.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:25:47.0
bristerpostma changed note to Function unknown. Possible Global DNA-binding transcriptional dual regulator. at 2018-11-30 15:25:47.0

Gene Number: 40
faith changed starterator analysis to SS at 2019-01-31 17:25:08.0
dcedwards changed note to  at 2019-01-31 17:24:02.0
dcedwards changed synteny to  at 2019-01-31 17:24:02.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:23:05.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: function unknown at 2019-01-31 11:06:00.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:06:00.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075304 Query Range: (1-59) Target Range: (1-59) at 2019-01-31 11:06:00.0
dcedwards Added HHPRED Evidence Accession: PF11225.7 Description: DUF3024 ; Protein of unknown function (DUF3024) Query Range: (4-50) Target Range: (6-45) at 2019-01-31 11:06:00.0
dcedwards changed the gene function to NKF at 2019-01-31 11:06:00.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 12:08:33.0
faith changed the gene function to Unknown at 2018-11-30 12:08:33.0
faith changed note to Protein of unknown function; closely related phages also have unknown proteins here. at 2018-11-30 12:08:33.0
faith changed synteny to Hypothetical protein of unknown function at 2018-11-30 12:08:33.0

Gene Number: 41
faith changed starterator analysis to SS at 2019-01-31 17:26:34.0
dcedwards changed synteny to  at 2019-01-31 17:24:11.0
dcedwards Added HHPRED Evidence Accession: 4E45_E Description: Centromere protein S, Centromere protein; Histone-Fold, Pentamer, Fanconi Anemia, Helicase; HET: GOL; 2.0A {Homo sapiens} Query Range: (12-26) Target Range: (85-99) at 2019-01-31 11:06:37.0
dcedwards changed the gene function to NKF at 2019-01-31 11:06:37.0
tiffanylujan Added Phages DB Evidence Phage Name: Bxb1 Function: function unknown at 2018-12-01 12:53:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2018-12-01 12:53:13.0
tiffanylujan Removed Phages DB Evidence Phage Name: Wheeler Function: function unknown at 2018-12-01 12:53:13.0
tiffanylujan Added NCBI BLAST Evidence Accession: NP_075305 Query Range: (1-31) Target Range: (1-31) at 2018-12-01 12:53:13.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AVO23447 Query Range: (1-31) Target Range: (79-109) at 2018-12-01 12:53:13.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AOQ29439 Query Range: (1-31) Target Range: (18-48) at 2018-12-01 12:53:13.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AEJ92976 Query Range: (1-31) Target Range: (1-31) at 2018-12-01 12:53:13.0
tiffanylujan Added Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2018-11-30 09:30:40.0
tiffanylujan Added Phages DB Evidence Phage Name: Wheeler Function: function unknown at 2018-11-30 09:30:40.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVO23447 Query Range: (1-31) Target Range: (79-109) at 2018-11-30 09:30:40.0
tiffanylujan Added NCBI BLAST Evidence Accession: AOQ29439 Query Range: (1-31) Target Range: (18-48) at 2018-11-30 09:30:40.0
tiffanylujan Added NCBI BLAST Evidence Accession: AEJ92976 Query Range: (1-31) Target Range: (1-31) at 2018-11-30 09:30:40.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 09:30:40.0
tiffanylujan changed synteny to Hypothetical Protein at 2018-11-30 09:30:40.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:27:16.0

Gene Number: 42
faith changed starterator analysis to SS at 2019-01-31 17:28:58.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:23:54.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:07:28.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009013499 Query Range: (1-89) Target Range: (1-89) at 2019-01-31 11:07:28.0
dcedwards Added HHPRED Evidence Accession: 2OP7_A Description: NEDD4-like E3 ubiquitin-protein ligase WWP1; WW domain, Beta sheet, LIGASE; NMR {Homo sapiens} SCOP: k.22.1.1 Query Range: (65-85) Target Range: (1-20) at 2019-01-31 11:07:28.0
dcedwards changed the gene function to NKF at 2019-01-31 11:07:28.0

Gene Number: 43
faith changed starterator analysis to SS at 2019-01-31 17:31:39.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:25:08.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:08:07.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009016030 Query Range: (1-118) Target Range: (1-118) at 2019-01-31 11:08:07.0
dcedwards Added HHPRED Evidence Accession: PF14197.5 Description: Cep57_CLD_2 ; Centrosome localisation domain of PPC89 Query Range: (62-117) Target Range: (5-60) at 2019-01-31 11:08:07.0
dcedwards changed the gene function to NKF at 2019-01-31 11:08:07.0
leahdowell changed the gene function to Unknown at 2018-11-30 09:17:25.0

Gene Number: 44
dcedwards changed synteny to Strong HHpred alignment to Klenow fragment of DNA polymerase I at 2019-02-07 23:03:34.0
dcedwards Added Phages DB Evidence Phage Name: Perseus Function: DNA polymerase I at 2019-02-02 17:37:19.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009016031 Query Range: (1-609) Target Range: (1-609) at 2019-02-02 17:37:19.0
dcedwards Added HHPRED Evidence Accession: 2KFZ_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 Query Range: (11-591) Target Range: (3-605) at 2019-02-02 17:37:19.0
dcedwards Removed Phages DB Evidence Phage Name: Perseus Function: DNA polymerase I at 2019-02-02 17:34:29.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009016031 Query Range: (1-609) Target Range: (1-609) at 2019-02-02 17:34:29.0
dcedwards Removed HHPRED Evidence Accession: 2KFZ_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 Query Range: (11-591) Target Range: (3-605) at 2019-02-02 17:34:29.0
dcedwards changed gene to included.
dcedwards changed gene to not included.
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-02-02 16:38:05.0
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: DNA polymerase 1 at 2019-02-02 16:38:05.0
dcedwards changed note to  at 2019-01-31 17:24:37.0
dcedwards Added CDD Evidence Accession: pfam00476 Query Range: (342-569) Target Range: (71-324) at 2019-01-31 11:08:43.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:41:06.0
bristerpostma Added Phages DB Evidence Phage Name: Perseus Function: DNA polymerase I at 2018-11-30 15:41:06.0
bristerpostma Added Phages DB Evidence Phage Name: Abrogate Function: DNA polymerase 1 at 2018-11-30 15:41:06.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009016031 Query Range: (1-609) Target Range: (1-609) at 2018-11-30 15:41:06.0
bristerpostma Added HHPRED Evidence Accession: 2KFZ_A Description: KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 Query Range: (11-591) Target Range: (3-605) at 2018-11-30 15:41:06.0
bristerpostma changed the gene function to DNA polymerase I at 2018-11-30 15:41:06.0
bristerpostma changed note to KLENOW FRAGMENT OF DNA POLYMERASE; POLYMERASE (EXONUCLEASE)-DNA COMPLEX, TRANSFERASE, TRANSFERASE-DNA; 2.03A {Escherichia coli} SCOP: e.8.1.1, c.55.3.5 at 2018-11-30 15:41:06.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:41:06.0

Gene Number: 45
faith changed starterator analysis to SS at 2019-01-31 17:35:48.0
dcedwards changed note to  at 2019-01-31 17:24:51.0
dcedwards changed synteny to  at 2019-01-31 17:24:51.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:25:58.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:09:22.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994595 Query Range: (1-76) Target Range: (1-76) at 2019-01-31 11:09:22.0
dcedwards Added HHPRED Evidence Accession: PF08995.9 Description: NIP_1 ; Necrosis inducing protein-1 Query Range: (7-30) Target Range: (6-29) at 2019-01-31 11:09:22.0
dcedwards changed the gene function to NKF at 2019-01-31 11:09:22.0
faith changed the gene function to Unknown at 2018-11-30 12:15:43.0
faith changed note to Protein of unknown function; other closely related phages also do not list a function. at 2018-11-30 12:15:43.0
faith changed synteny to Hypothetical protein of unknown function at 2018-11-30 12:15:43.0

Gene Number: 46
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-02-02 16:53:53.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_008409781 Query Range: (1-159) Target Range: (1-159) at 2019-02-02 16:53:53.0
faith changed starterator analysis to SS at 2019-01-31 17:37:34.0
dcedwards changed synteny to  at 2019-01-31 17:25:04.0
dcedwards Added HHPRED Evidence Accession: PF17618.1 Description: SL4P ; Uncharacterized Strongylid L4 protein Query Range: (43-78) Target Range: (6-40) at 2019-01-31 11:09:55.0
dcedwards changed the gene function to NKF at 2019-01-31 11:09:55.0
tiffanylujan Removed Phages DB Evidence Phage Name: Nerujay Function: function unknown at 2018-12-01 12:54:05.0
tiffanylujan Removed HHPRED Evidence Accession: PF17618.1 Description: SL4P ; Uncharacterized Strongylid L4 protein Query Range: (43-78) Target Range: (6-40) at 2018-12-01 12:54:05.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009209435 Query Range: (1-159) Target Range: (1-159) at 2018-11-30 09:34:28.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008409781 Query Range: (1-159) Target Range: (1-159) at 2018-11-30 09:34:28.0
tiffanylujan Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2018-11-30 09:34:13.0
tiffanylujan Added Phages DB Evidence Phage Name: Trouble Function: function unknown at 2018-11-30 09:34:13.0
tiffanylujan Added Phages DB Evidence Phage Name: Nerujay Function: function unknown at 2018-11-30 09:34:13.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:34:13.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:33:01.0
morphew99 Added HHPRED Evidence Accession: PF17618.1 Description: SL4P ; Uncharacterized Strongylid L4 protein Query Range: (43-78) Target Range: (6-40) at 2018-11-06 05:39:13.0
morphew99 changed the gene function to Unknown at 2018-11-06 05:39:13.0

Gene Number: 47
faith changed starterator analysis to SS at 2019-01-31 17:38:07.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:26:37.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:10:26.0
dcedwards Added NCBI BLAST Evidence Accession: AEK10541 Query Range: (1-60) Target Range: (1-60) at 2019-01-31 11:10:26.0
dcedwards Added HHPRED Evidence Accession: PF17468.1 Description: Gp52 ; Phage protein Gp52 Query Range: (1-60) Target Range: (2-60) at 2019-01-31 11:10:26.0
dcedwards changed the gene function to NKF at 2019-01-31 11:10:26.0

Gene Number: 48
dcedwards changed synteny to Strong HHpred alignment to RNA polymerase sigma factor. Other phages have this pham called as such. at 2019-02-07 23:07:03.0
dcedwards Added Phages DB Evidence Phage Name: Niza Function: RNA Polymerase Sigma Factor at 2019-02-07 23:06:14.0
dcedwards Removed Phages DB Evidence Phage Name: Blue Function: HTH DNA binding domain protein at 2019-02-07 23:06:14.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009205088 Query Range: (1-263) Target Range: (1-271) at 2019-02-07 23:06:14.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ49516 Query Range: (1-263) Target Range: (1-263) at 2019-02-07 23:06:14.0
dcedwards Added HHPRED Evidence Accession: 3VDO_A Description: RNA polymerase sigma factor sigK; ECF sigma factor, promoter DNA; 2.4A {Mycobacterium tuberculosis} Query Range: (3-158) Target Range: (26-187) at 2019-02-07 23:06:14.0
dcedwards changed the gene function to RNA polymerase sigma factor at 2019-02-07 23:05:04.0
dcedwards Removed Phages DB Evidence Phage Name: Corvo Function: helix-turn-helix DNA binding protein at 2019-02-02 16:54:45.0
dcedwards Removed NCBI BLAST Evidence Accession: APQ42405 Query Range: (1-263) Target Range: (1-263) at 2019-02-02 16:54:45.0
dcedwards Removed NCBI BLAST Evidence Accession: ATW59834 Query Range: (1-263) Target Range: (1-263) at 2019-02-02 16:54:45.0
dcedwards Removed NCBI BLAST Evidence Accession: AVJ51403 Query Range: (1-263) Target Range: (1-263) at 2019-02-02 16:54:45.0
faith changed starterator analysis to SS at 2019-01-31 17:38:58.0
dcedwards changed synteny to  at 2019-01-31 17:26:29.0
dcedwards changed the coding capacity to yes at 2019-01-31 16:27:14.0
leahdowell changed synteny to Binds to the DNA at 2018-11-30 09:46:36.0
leahdowell Added Phages DB Evidence Phage Name: Corvo Function: helix-turn-helix DNA binding protein at 2018-11-30 08:35:58.0
leahdowell Added Phages DB Evidence Phage Name: Blue Function: HTH DNA binding domain protein at 2018-11-30 08:35:58.0
leahdowell Added NCBI BLAST Evidence Accession: AVJ49516 Query Range: (1-263) Target Range: (1-263) at 2018-11-30 08:35:58.0
leahdowell Added NCBI BLAST Evidence Accession: APQ42405 Query Range: (1-263) Target Range: (1-263) at 2018-11-30 08:35:58.0
leahdowell Added NCBI BLAST Evidence Accession: AVJ51403 Query Range: (1-263) Target Range: (1-263) at 2018-11-30 08:35:58.0
leahdowell Added NCBI BLAST Evidence Accession: ATW59834 Query Range: (1-263) Target Range: (1-263) at 2018-11-30 08:35:58.0
leahdowell changed the gene function to helix-turn-helix DNA binding domain at 2018-11-30 08:35:58.0

Gene Number: 49
dcedwards changed note to  at 2019-02-07 23:10:46.0
faith changed starterator analysis to SS at 2019-01-31 17:39:44.0
dcedwards Added Phages DB Evidence Phage Name: Barriga Function: function unknown at 2019-01-31 11:10:58.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:10:58.0
dcedwards changed the gene function to NKF at 2019-01-31 11:10:58.0
bristerpostma changed note to Unknown function. Possible Excisionase or Axin 1 protein; SIGNALING PROTEIN; at 2018-11-30 15:46:35.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:43:58.0
bristerpostma Added NCBI BLAST Evidence Accession: NP_075313 Query Range: (1-46) Target Range: (1-46) at 2018-11-30 15:43:58.0
bristerpostma Added HHPRED Evidence Accession: PF09035.9 Description: Tn916-Xis ; Excisionase from transposon Tn916 Query Range: (5-33) Target Range: (37-65) at 2018-11-30 15:43:58.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 15:43:58.0
bristerpostma changed note to Unknown function. Possible Excisionase at 2018-11-30 15:43:58.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:43:58.0

Gene Number: 50
dcedwards changed synteny to contains intein domain at 2019-02-07 23:11:35.0
dcedwards changed note to  at 2019-02-07 23:11:10.0
dcedwards Removed Phages DB Evidence Phage Name: PhrostyMug Function: RDF protein at 2019-02-02 16:55:53.0
dcedwards Removed Phages DB Evidence Phage Name: KBG Function: recombination directionality factor at 2019-02-02 16:55:53.0
dcedwards Removed Phages DB Evidence Phage Name: Aeneas Function: phosphoesterase at 2019-02-02 16:55:53.0
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: phosphoesterase at 2019-02-02 16:55:53.0
dcedwards Removed Phages DB Evidence Phage Name: Pepe Function: endonuclease at 2019-02-02 16:55:53.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001994511 Query Range: (1-572) Target Range: (1-572) at 2019-02-02 16:55:53.0
dcedwards changed the gene function to phosphoesterase at 2019-02-01 11:31:21.0
dcedwards changed note to Possibly an endonuclease, hydrolase, RDF protein, or phosphoesterase. at 2019-02-01 11:31:21.0
faith changed starterator analysis to SS at 2019-01-31 17:41:55.0
dcedwards Added Phages DB Evidence Phage Name: Pepe Function: endonuclease at 2019-01-31 11:25:29.0
dcedwards changed the gene function to endonuclease at 2019-01-31 11:25:29.0
dcedwards changed note to Possibly an endonuclease, hydrolale, RDF protein, or phosphoesterase. at 2019-01-31 11:25:29.0
dcedwards Added Phages DB Evidence Phage Name: Oogway Function: phosphoesterase at 2019-01-31 11:16:23.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: phosphoesterase at 2019-01-31 11:16:23.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: phosphoesterase at 2019-01-31 11:16:23.0
dcedwards Added Phages DB Evidence Phage Name: KBG Function: recombination directionality factor at 2019-01-31 11:16:23.0
dcedwards Added Phages DB Evidence Phage Name: PhrostyMug Function: RDF protein at 2019-01-31 11:16:23.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:16:23.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001491703 Query Range: (1-572) Target Range: (1-572) at 2019-01-31 11:16:23.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994511 Query Range: (1-572) Target Range: (1-572) at 2019-01-31 11:16:23.0
dcedwards changed the gene function to phosphoesterase at 2019-01-31 11:16:23.0
dcedwards changed note to Possibly an endonuclease, RDF protein, or phosphoesterase. at 2019-01-31 11:16:23.0
dcedwards changed synteny to  at 2019-01-31 11:16:23.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 12:32:47.0
faith Added HHPRED Evidence Accession: 2CW8_A Description: Endonuclease PI-PkoII (E.C.3.1.-.-); hydrolase; HET: GOL, SO4; 2.5A {Thermococcus kodakarensis} Query Range: (95-411) Target Range: (1-537) at 2018-11-30 12:32:47.0
faith changed the gene function to Unknown at 2018-11-30 12:32:47.0
faith changed note to Probably a endonuclease PI-PkoII, a intein endonuclease. at 2018-11-30 12:32:47.0
faith changed synteny to Hypothetical protein of unknown function at 2018-11-30 12:32:47.0

Gene Number: 51
dcedwards Removed Phages DB Evidence Phage Name: Switzer Function: function unknown at 2019-02-02 16:56:10.0
faith changed starterator analysis to SS at 2019-01-31 17:42:30.0
dcedwards Added HHPRED Evidence Accession: 3H5O_A Description: Transcriptional regulator GntR; 11234b, transcription regulator, GntR,Chromobacterium violaceum; HET: SO4; 2.3A {Chromobacterium violaceum} Query Range: (26-58) Target Range: (15-47) at 2019-01-31 11:26:51.0
dcedwards changed the gene function to NKF at 2019-01-31 11:26:51.0
dcedwards changed synteny to  at 2019-01-31 11:26:51.0
tiffanylujan Added Phages DB Evidence Phage Name: Switzer Function: function unknown at 2018-12-01 12:57:37.0
tiffanylujan Added Phages DB Evidence Phage Name: Oogway Function: function unknown at 2018-12-01 12:57:37.0
tiffanylujan Removed Phages DB Evidence Phage Name: Treddle Function: function unknown at 2018-12-01 12:57:37.0
tiffanylujan Removed Phages DB Evidence Phage Name: Solon Function: function unknown at 2018-12-01 12:57:37.0
tiffanylujan Removed Phages DB Evidence Phage Name: Rhynn_Draft Function: function unknown at 2018-12-01 12:57:37.0
tiffanylujan Removed NCBI BLAST Evidence Accession: YP_009211763 Query Range: (1-59) Target Range: (1-59) at 2018-12-01 12:57:37.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 09:38:10.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:38:10.0
tiffanylujan Added NCBI BLAST Evidence Accession: AEK10353 Query Range: (1-59) Target Range: (1-59) at 2018-11-30 09:35:54.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009211763 Query Range: (1-59) Target Range: (1-59) at 2018-11-30 09:35:54.0
tiffanylujan Added Phages DB Evidence Phage Name: Treddle Function: function unknown at 2018-11-30 09:35:30.0
tiffanylujan Added Phages DB Evidence Phage Name: Solon Function: function unknown at 2018-11-30 09:35:30.0
tiffanylujan Added Phages DB Evidence Phage Name: Rhynn_Draft Function: function unknown at 2018-11-30 09:35:30.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:35:14.0

Gene Number: 52
dcedwards Removed Phages DB Evidence Phage Name: Rufus Function: putative DNA primase at 2019-02-02 16:56:40.0
dcedwards Added NCBI BLAST Evidence Accession: AVJ49158 Query Range: (1-132) Target Range: (5-136) at 2019-02-02 16:56:40.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009199568 Query Range: (1-132) Target Range: (1-132) at 2019-02-02 16:56:40.0
faith changed starterator analysis to SS at 2019-01-31 17:43:31.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:06:47.0
dcedwards Added Phages DB Evidence Phage Name: Rufus Function: putative DNA primase at 2019-01-31 11:27:36.0
dcedwards Added Phages DB Evidence Phage Name: Sibs6 Function: function unknown at 2019-01-31 11:27:36.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009199568 Query Range: (1-132) Target Range: (1-132) at 2019-01-31 11:27:36.0
dcedwards Added HHPRED Evidence Accession: PF07659.10 Description: DUF1599 ; Domain of Unknown Function (DUF1599) Query Range: (67-80) Target Range: (44-57) at 2019-01-31 11:27:36.0
dcedwards changed the gene function to NKF at 2019-01-31 11:27:36.0
taylorwommack changed the gene function to unknown at 2018-11-06 05:29:45.0

Gene Number: 53
dcedwards changed synteny to Strong HHpred alignment to DNA primase. There is also a second DNA primase gene adjacent that was not called by glimmer. at 2019-02-07 23:21:43.0
dcedwards Removed Phages DB Evidence Phage Name: Trouble Function: DNA primase at 2019-02-02 16:57:32.0
dcedwards Removed Phages DB Evidence Phage Name: Violet Function: DNA primase at 2019-02-02 16:57:32.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_009012741 Query Range: (1-192) Target Range: (1-192) at 2019-02-02 16:57:32.0
dcedwards Removed HHPRED Evidence Accession: 4EDR_A Description: DNA primase (E.C.2.7.7.-); Catalytic Domain, nucleoside triphosphate, nucleoside; HET: BEN, UTP; 2.01A {Staphylococcus aureus} Query Range: (1-192) Target Range: (31-255) at 2019-02-02 16:57:32.0
faith changed starterator analysis to SS at 2019-01-31 17:45:24.0
dcedwards changed synteny to  at 2019-01-31 17:26:59.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:07:00.0
leahdowell changed synteny to Primes DNA for replication at 2018-11-30 09:47:41.0
leahdowell Added Phages DB Evidence Phage Name: Trouble Function: DNA primase at 2018-11-30 08:38:55.0
leahdowell Added Phages DB Evidence Phage Name: Kykar Function: DNA primase at 2018-11-30 08:38:55.0
leahdowell Added Phages DB Evidence Phage Name: Violet Function: DNA primase at 2018-11-30 08:38:55.0
leahdowell Added CDD Evidence Accession: COG0358 Query Range: (2-190) Target Range: (130-349) at 2018-11-30 08:38:55.0
leahdowell Added CDD Evidence Accession: TIGR01391 Query Range: (5-190) Target Range: (140-358) at 2018-11-30 08:38:55.0
leahdowell Added NCBI BLAST Evidence Accession: YP_008409789 Query Range: (1-192) Target Range: (1-192) at 2018-11-30 08:38:55.0
leahdowell Added NCBI BLAST Evidence Accession: YP_009012741 Query Range: (1-192) Target Range: (1-192) at 2018-11-30 08:38:55.0
leahdowell Added HHPRED Evidence Accession: 5VAZ_B Description: DNA primase (E.C.2.7.7.-); structural genomics, DNA-binding, primase, truncation; HET: SO4; 2.4A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)} Query Range: (1-191) Target Range: (43-269) at 2018-11-30 08:38:55.0
leahdowell Added HHPRED Evidence Accession: 4EDR_A Description: DNA primase (E.C.2.7.7.-); Catalytic Domain, nucleoside triphosphate, nucleoside; HET: BEN, UTP; 2.01A {Staphylococcus aureus} Query Range: (1-192) Target Range: (31-255) at 2018-11-30 08:38:55.0
leahdowell changed the gene function to DNA primase at 2018-11-30 08:38:55.0
taylorwommack changed the gene function to unknown at 2018-11-06 05:29:25.0

Gene Number: 54
faith changed starterator analysis to SS at 2019-01-31 17:46:57.0
dcedwards changed note to  at 2019-01-31 17:27:11.0
dcedwards Added Phages DB Evidence Phage Name: Big3_Draft Function: function unknown at 2019-01-31 11:28:55.0
dcedwards changed the gene function to NKF at 2019-01-31 11:28:55.0
bristerpostma Added NCBI BLAST Evidence Accession: AEJ91976 Query Range: (1-54) Target Range: (1-54) at 2018-11-30 15:49:40.0
bristerpostma Added HHPRED Evidence Accession: 3IS6_A Description: putative permease protein, ABC transporter; ABC, transporter, permease, porphyromonas, gingivalis; 1.95A {Porphyromonas gingivalis} Query Range: (4-36) Target Range: (173-208) at 2018-11-30 15:49:40.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:49:40.0
bristerpostma changed note to Unknown function. Possible putative permease protein, ABC transporter at 2018-11-30 15:49:40.0
bristerpostma changed the coding capacity to yes at 2018-11-30 15:49:40.0
jack21bonnell changed the gene function to Unknown at 2018-11-06 05:30:28.0
jack21bonnell changed note to Possibly Mechanosensitive channel protein at 2018-11-06 05:30:28.0

Gene Number: 55
faith changed starterator analysis to SS at 2019-01-31 17:52:07.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:07:28.0
dcedwards changed note to Manually added this gene to match phagesdb at 2019-01-31 12:43:43.0
dcedwards Added Phages DB Evidence Phage Name: BeesKnees Function: membrane protein at 2019-01-31 12:42:36.0
dcedwards Added NCBI BLAST Evidence Accession: AVI03595 Query Range: (1-26) Target Range: (1-26) at 2019-01-31 12:42:36.0
dcedwards Added HHPRED Evidence Accession: 3DD4_A Description: Kv channel-interacting protein 4; EF-hands protein, Ion transport, Ionic; 3.0A {Mus musculus} Query Range: (1-24) Target Range: (1-24) at 2019-01-31 12:42:36.0
dcedwards changed the gene function to NKF at 2019-01-31 12:42:36.0
dcedwards Added Phages DB Evidence Phage Name: BeesKnees Function: membrane protein at 2019-01-31 12:15:36.0

Gene Number: 56
dcedwards changed note to  at 2019-02-07 23:12:48.0
faith changed starterator analysis to SS at 2019-01-31 17:52:43.0
dcedwards changed synteny to  at 2019-01-31 17:27:34.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:08:41.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 11:29:48.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:29:48.0
dcedwards changed the gene function to NKF at 2019-01-31 11:29:48.0
dcedwards changed note to Possibly a Gp63 phage protein; has a very high probabilty according to HHpred. at 2019-01-31 11:29:48.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 03:34:48.0
faith Added NCBI BLAST Evidence Accession: NP_075320 Query Range: (1-44) Target Range: (1-44) at 2018-12-01 03:34:48.0
faith Added HHPRED Evidence Accession: PF17471.1 Description: Gp63 ; Hypothetical phage protein Gp63 Query Range: (5-44) Target Range: (3-73) at 2018-12-01 03:34:48.0
faith changed the gene function to Unknown at 2018-12-01 03:34:48.0
faith changed note to Probably a Gp63 phage protein; has a very high probabilty according to HHpred. at 2018-12-01 03:34:48.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 03:34:48.0
jack21bonnell changed the gene function to unknown at 2018-11-06 05:40:42.0
jack21bonnell changed note to possibly membrane protein at 2018-11-06 05:40:42.0

Gene Number: 57
dcedwards changed synteny to This pham has been characterized as a DNA methylase across multiple clusters. at 2019-02-07 23:14:08.0
faith changed starterator analysis to SS at 2019-01-31 17:54:18.0
dcedwards changed synteny to  at 2019-01-31 17:27:47.0
tiffanylujan Removed CDD Evidence Accession: pfam01555 Query Range: (23-346) Target Range: (1-221) at 2018-12-01 12:59:21.0
tiffanylujan Added HHPRED Evidence Accession: 1NW8_A Description: MODIFICATION METHYLASE RSRI (E.C.2.1.1.72); ADENINE DNA METHYLTRANSFERASE, ROSSMANN FOLD; 2.25A {Rhodobacter sphaeroides} SCOP: c.66.1.11 Query Range: (3-352) Target Range: (39-288) at 2018-12-01 12:59:21.0
tiffanylujan changed synteny to Controls gene regulation through methylation, genes encoding regulation are typically in the back of the genome. at 2018-12-01 12:59:21.0
tiffanylujan Added Phages DB Evidence Phage Name: Smeagol Function: DNA methylase at 2018-11-30 09:48:44.0
tiffanylujan Added CDD Evidence Accession: pfam01555 Query Range: (23-346) Target Range: (1-221) at 2018-11-30 09:48:44.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVO22374 Query Range: (1-353) Target Range: (1-356) at 2018-11-30 09:48:44.0
tiffanylujan Added HHPRED Evidence Accession: 1G60_A Description: Adenine-specific Methyltransferase MboIIA (E.C.2.1.1.72); STRUCTURAL GENOMICS, MORAXELLA BOVIS, DNA; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Query Range: (1-352) Target Range: (2-258) at 2018-11-30 09:48:44.0
tiffanylujan changed the gene function to DNA methylase at 2018-11-30 09:48:44.0
tiffanylujan changed note to  at 2018-11-30 09:48:44.0
tiffanylujan changed synteny to Controls gene regulation through methylation at 2018-11-30 09:48:44.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:41:13.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:40:46.0
jnowell5801 changed the gene function to Unknown at 2018-11-06 05:37:58.0
jnowell5801 changed note to hypothetical phage protein at 2018-11-06 05:37:58.0

Gene Number: 58
dcedwards changed synteny to Strong HHpred alignment to endonuclease VII. This pham is also well characterized as endonuclease VII at 2019-02-07 23:14:57.0
faith changed starterator analysis to SS at 2019-01-31 17:55:47.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:08:57.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: endonuclase VII at 2019-01-31 11:31:51.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008050827 Query Range: (1-164) Target Range: (1-164) at 2019-01-31 11:31:51.0
dcedwards Added HHPRED Evidence Accession: PF02945.14 Description: Endonuclease_7 ; Recombination endonuclease VII Query Range: (49-130) Target Range: (1-89) at 2019-01-31 11:31:51.0
dcedwards Added HHPRED Evidence Accession: 1E7L_A Description: RECOMBINATION ENDONUCLEASE VII (E.C.3.1.22.4); ENDONUCLEASE, RESOLVASE, HOLLIDAY JUNCTION, DNASE; HET: SO4; 1.32A {BACTERIOPHAGE T4} SCOP: d.4.1.5, a.140.4.1 Query Range: (58-155) Target Range: (7-122) at 2019-01-31 11:31:51.0
dcedwards changed the gene function to endonuclease VII at 2019-01-31 11:31:51.0
boonedog7 changed the gene function to endonuclease at 2018-11-06 05:42:35.0

Gene Number: 59
faith changed starterator analysis to SS at 2019-01-31 17:56:57.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:09:18.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009032110 Query Range: (1-32) Target Range: (12-43) at 2019-01-31 11:32:39.0
dcedwards Added HHPRED Evidence Accession: PF11990.7 Description: DUF3487 ; Protein of unknown function (DUF3487) Query Range: (3-28) Target Range: (18-43) at 2019-01-31 11:32:39.0
dcedwards changed the gene function to NKF at 2019-01-31 11:32:39.0
dcedwards changed note to  at 2019-01-31 11:32:39.0
leahdowell changed the gene function to Unknown at 2018-11-30 09:17:00.0
leahdowell Added Phages DB Evidence Phage Name: Papez Function: endonuclease VII at 2018-11-30 09:01:29.0
leahdowell changed note to HHpred shows it to be a possible endonuclease VII at 2018-11-30 09:01:29.0

Gene Number: 60
faith changed starterator analysis to SS at 2019-01-31 17:57:30.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:10:35.0
dcedwards Added Phages DB Evidence Phage Name: SG4 Function: function unknown at 2019-01-31 11:33:15.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:33:15.0
dcedwards changed the gene function to NKF at 2019-01-31 11:33:15.0
dcedwards changed note to  at 2019-01-31 11:33:15.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 15:52:51.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009013288 Query Range: (1-118) Target Range: (8-125) at 2018-11-30 15:52:51.0
bristerpostma Added HHPRED Evidence Accession: PF08815.9 Description: Nuc_rec_co-act ; Nuclear receptor coactivator Query Range: (47-54) Target Range: (26-33) at 2018-11-30 15:52:51.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 15:52:51.0
bristerpostma changed note to Unknown function. Possible Nuclear receptor coactivator at 2018-11-30 15:52:51.0

Gene Number: 61
faith changed starterator analysis to SS at 2019-01-31 17:58:38.0
dcedwards changed note to  at 2019-01-31 17:28:18.0
dcedwards changed synteny to  at 2019-01-31 17:28:18.0
dcedwards Added Phages DB Evidence Phage Name: EleanorGeorge Function: function unknown at 2019-01-31 11:33:48.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009013287 Query Range: (1-60) Target Range: (1-60) at 2019-01-31 11:33:48.0
dcedwards Added HHPRED Evidence Accession: 1TC3_C Description: TC3 TRANSPOSASE/DNA COMPLEX; TRANSPOSASE, DNA BINDING, HELIX-TURN-HELIX, TC1/MARINER; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Query Range: (1-45) Target Range: (6-50) at 2019-01-31 11:33:48.0
dcedwards changed the gene function to NKF at 2019-01-31 11:33:48.0
faith changed the gene function to Unknown at 2018-12-01 03:55:11.0
faith changed note to Unknown based off of low probability on HHpred, but it is most likely a protein according to the Blast. Start and stop numbers do not match up on PECAAN and the Pham report. at 2018-12-01 03:55:11.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 03:55:11.0

Gene Number: 62
faith changed starterator analysis to SS at 2019-01-31 17:59:03.0
dcedwards changed synteny to  at 2019-01-31 17:28:29.0
dcedwards Added Phages DB Evidence Phage Name: BuzzLyseyear Function: function unknown at 2019-01-31 11:34:17.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008126674 Query Range: (1-86) Target Range: (9-94) at 2019-01-31 11:34:17.0
dcedwards Added HHPRED Evidence Accession: PF08815.9 Description: Nuc_rec_co-act ; Nuclear receptor coactivator Query Range: (44-51) Target Range: (26-33) at 2019-01-31 11:34:17.0
dcedwards changed the gene function to NKF at 2019-01-31 11:34:17.0
tiffanylujan Removed Phages DB Evidence Phage Name: Job42 Function: function unknown at 2018-12-01 13:00:23.0
tiffanylujan Removed Phages DB Evidence Phage Name: BuzzLyseyear Function: function unknown at 2018-12-01 13:00:23.0
tiffanylujan Removed NCBI BLAST Evidence Accession: YP_008126674 Query Range: (1-86) Target Range: (9-94) at 2018-12-01 13:00:23.0
tiffanylujan Removed NCBI BLAST Evidence Accession: YP_009214437 Query Range: (1-86) Target Range: (9-94) at 2018-12-01 13:00:23.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 09:50:44.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:50:44.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_008126674 Query Range: (1-86) Target Range: (9-94) at 2018-11-30 09:50:27.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009214437 Query Range: (1-86) Target Range: (9-94) at 2018-11-30 09:50:27.0
tiffanylujan Added Phages DB Evidence Phage Name: Job42 Function: function unknown at 2018-11-30 09:50:00.0
tiffanylujan Added Phages DB Evidence Phage Name: BuzzLyseyear Function: function unknown at 2018-11-30 09:50:00.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:49:49.0

Gene Number: 63
faith changed starterator analysis to SS at 2019-01-31 18:01:09.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:16:58.0
dcedwards Added Phages DB Evidence Phage Name: Krakatau Function: function unknown at 2019-01-31 11:35:00.0
dcedwards Added NCBI BLAST Evidence Accession: NP_818367 Query Range: (1-125) Target Range: (33-157) at 2019-01-31 11:35:00.0
dcedwards Added HHPRED Evidence Accession: PF07865.10 Description: DUF1652 ; Protein of unknown function (DUF1652) Query Range: (34-106) Target Range: (4-67) at 2019-01-31 11:35:00.0
dcedwards changed the gene function to NKF at 2019-01-31 11:35:00.0

Gene Number: 64
faith changed starterator analysis to SS at 2019-01-31 18:01:59.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:18:05.0
dcedwards Added Phages DB Evidence Phage Name: Adnama Function: function unknown at 2019-01-31 11:35:49.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009013282 Query Range: (1-42) Target Range: (39-80) at 2019-01-31 11:35:49.0
dcedwards Added HHPRED Evidence Accession: PF00372.18 Description: Hemocyanin_M ; Hemocyanin, copper containing domain Query Range: (22-31) Target Range: (261-270) at 2019-01-31 11:35:49.0
dcedwards changed the gene function to NKF at 2019-01-31 11:35:49.0
leahdowell changed the gene function to unknown at 2018-11-30 09:15:47.0

Gene Number: 65
faith changed starterator analysis to SS at 2019-01-31 18:02:37.0
dcedwards changed note to  at 2019-01-31 17:19:15.0
dcedwards Added Phages DB Evidence Phage Name: Squirty Function: function unknown at 2019-01-31 11:36:20.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:36:20.0
dcedwards Added NCBI BLAST Evidence Accession: AUX81823 Query Range: (42-102) Target Range: (1-61) at 2019-01-31 11:36:20.0
dcedwards changed the gene function to NKF at 2019-01-31 11:36:20.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:07:59.0
bristerpostma Added HHPRED Evidence Accession: PF14620.5 Description: YPEB ; YpeB sporulation Query Range: (5-83) Target Range: (208-289) at 2018-11-30 16:07:59.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:07:59.0
bristerpostma changed note to Unknown function. Phagedb gives alternate start at 43054 and stop at 42677. at 2018-11-30 16:07:59.0
bristerpostma changed the coding capacity to no at 2018-11-30 16:07:59.0

Gene Number: 66
dcedwards changed synteny to This pham is well characterized as NrdH-like glutaredoxin at 2019-02-07 23:17:57.0
dcedwards Removed Phages DB Evidence Phage Name: BPBiebs31 Function: NrdH at 2019-02-02 17:00:21.0
dcedwards Removed Phages DB Evidence Phage Name: CactusRose Function: glutaredoxin at 2019-02-02 17:00:21.0
dcedwards Removed HHPRED Evidence Accession: 1R7H_A Description: NrdH-redoxin; NRDH, THIOREDOXIN, GLUTAREDOXIN, REDOX PROTEIN; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Query Range: (10-86) Target Range: (1-75) at 2019-02-02 17:00:21.0
faith changed starterator analysis to SS at 2019-01-31 18:03:30.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:29:24.0
dcedwards Added Phages DB Evidence Phage Name: BPBiebs31 Function: NrdH at 2019-01-31 11:38:03.0
dcedwards Added Phages DB Evidence Phage Name: CactusRose Function: glutaredoxin at 2019-01-31 11:38:03.0
dcedwards Added Phages DB Evidence Phage Name: Maroc7 Function: NrdH glutaredoxin at 2019-01-31 11:38:03.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 11:38:03.0
dcedwards Added NCBI BLAST Evidence Accession: AVO22377 Query Range: (1-89) Target Range: (1-88) at 2019-01-31 11:38:03.0
dcedwards Added HHPRED Evidence Accession: 2LQO_A Description: Putative glutaredoxin Rv3198.1/MT3292 (E.C.1.-.-.-); Trx fold, OXIDOREDUCTASE; NMR {Mycobacterium tuberculosis} Query Range: (7-89) Target Range: (1-84) at 2019-01-31 11:38:03.0
dcedwards Added HHPRED Evidence Accession: 1R7H_A Description: NrdH-redoxin; NRDH, THIOREDOXIN, GLUTAREDOXIN, REDOX PROTEIN; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Query Range: (10-86) Target Range: (1-75) at 2019-01-31 11:38:03.0
dcedwards Removed HHPRED Evidence Accession: 1TTZ_A Description: conserved hypothetical protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 Query Range: (10-89) Target Range: (1-77) at 2019-01-31 11:38:03.0
dcedwards changed the gene function to NrdH-like glutaredoxin at 2019-01-31 11:38:03.0
dcedwards changed note to  at 2019-01-31 11:38:03.0
dcedwards changed synteny to  at 2019-01-31 11:38:03.0
faith changed note to Probably a hypothetical protein. In this area of the genome of there phages there is often a helicase. Start and stop site differs on PECAAN and the Pfam report. at 2018-12-01 04:02:46.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 04:02:12.0
faith Added HHPRED Evidence Accession: 1TTZ_A Description: conserved hypothetical protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 Query Range: (10-89) Target Range: (1-77) at 2018-12-01 04:02:12.0
faith changed the gene function to Unknown at 2018-12-01 04:02:12.0
faith changed note to Probably a hypothetical protein. In this area of the genome of there phages there is often a helicase. at 2018-12-01 04:02:12.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:02:12.0

Gene Number: 67
faith changed starterator analysis to SS at 2019-01-31 18:04:29.0
dcedwards Added Phages DB Evidence Phage Name: DrFeelGood Function: membrane protein at 2019-01-31 11:38:41.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009286745 Query Range: (4-35) Target Range: (1-32) at 2019-01-31 11:38:41.0
dcedwards Added HHPRED Evidence Accession: PF13314.5 Description: DUF4083 ; Domain of unknown function (DUF4083) Query Range: (22-35) Target Range: (43-56) at 2019-01-31 11:38:41.0
dcedwards changed the gene function to NKF at 2019-01-31 11:38:41.0
tiffanylujan Removed Phages DB Evidence Phage Name: Ruotula Function: function unknown at 2018-12-01 13:00:55.0
tiffanylujan Removed Phages DB Evidence Phage Name: Makemake Function: function unknown at 2018-12-01 13:00:55.0
tiffanylujan Removed NCBI BLAST Evidence Accession: YP_009286745 Query Range: (4-35) Target Range: (1-32) at 2018-12-01 13:00:55.0
tiffanylujan changed the gene function to Unknown at 2018-11-30 09:55:14.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:55:14.0
tiffanylujan Added Phages DB Evidence Phage Name: Ruotula Function: function unknown at 2018-11-30 09:55:02.0
tiffanylujan Added Phages DB Evidence Phage Name: Makemake Function: function unknown at 2018-11-30 09:55:02.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009286745 Query Range: (4-35) Target Range: (1-32) at 2018-11-30 09:55:02.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:54:30.0

Gene Number: 68
dcedwards changed synteny to Strong HHpred alignment to DNAB-like dsDNA helicase at 2019-02-07 23:18:57.0
faith changed starterator analysis to SS at 2019-01-31 18:05:03.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:30:44.0
dcedwards Added Phages DB Evidence Phage Name: Aeneas Function: DnaB-like helicase at 2019-01-31 13:01:14.0
dcedwards Added CDD Evidence Accession: PRK07773 Query Range: (1-85) Target Range: (184-275) at 2019-01-31 13:01:14.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075324 Query Range: (1-269) Target Range: (1-269) at 2019-01-31 13:01:14.0
dcedwards Added HHPRED Evidence Accession: PF03796.14 Description: DnaB_C ; DnaB-like helicase C terminal domain Query Range: (13-268) Target Range: (1-256) at 2019-01-31 13:01:14.0
dcedwards changed the gene function to DNAB-like dsDNA helicase at 2019-01-31 13:01:14.0

Gene Number: 69
dcedwards Removed Phages DB Evidence Phage Name: Pippin Function: membrane protein at 2019-02-02 17:01:39.0
faith changed starterator analysis to SS at 2019-01-31 18:05:49.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:36:05.0
dcedwards Added Phages DB Evidence Phage Name: Pippin Function: membrane protein at 2019-01-31 13:02:21.0
dcedwards Added Phages DB Evidence Phage Name: Bxb1 Function: function unknown at 2019-01-31 13:02:21.0
dcedwards Added NCBI BLAST Evidence Accession: AUX82448 Query Range: (1-48) Target Range: (1-48) at 2019-01-31 13:02:21.0
dcedwards Added NCBI BLAST Evidence Accession: NP_075325 Query Range: (1-48) Target Range: (1-48) at 2019-01-31 13:02:21.0
dcedwards Added HHPRED Evidence Accession: PF11371.7 Description: DUF3172 ; Protein of unknown function (DUF3172) Query Range: (14-27) Target Range: (8-21) at 2019-01-31 13:02:21.0
dcedwards changed the gene function to NKF at 2019-01-31 13:02:21.0
leahdowell changed the gene function to unknown at 2018-11-30 09:15:31.0

Gene Number: 70
dcedwards Added NCBI BLAST Evidence Accession: YP_009286750 Query Range: (1-97) Target Range: (1-97) at 2019-01-31 13:03:31.0
dcedwards changed the gene function to NKF at 2019-01-31 13:03:31.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:10:29.0
bristerpostma Added HHPRED Evidence Accession: PF17469.1 Description: Gp68 ; Phage protein Gp68 Query Range: (21-95) Target Range: (1-75) at 2018-11-30 16:10:29.0
bristerpostma changed the gene function to gp68 Phage Protein at 2018-11-30 16:10:29.0
bristerpostma changed note to Gp68 ; Phage protein Gp68 at 2018-11-30 16:10:29.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:10:29.0

Gene Number: 71
dcedwards Added CDD Evidence Accession: cd04762 Query Range: (14-30) Target Range: (8-24) at 2019-02-07 23:29:25.0
dcedwards Added NCBI BLAST Evidence Accession: AUX82451 Query Range: (1-60) Target Range: (1-60) at 2019-02-07 23:29:25.0
dcedwards Removed NCBI BLAST Evidence Accession: YP_001491720 Query Range: (1-60) Target Range: (1-60) at 2019-02-07 23:29:25.0
dcedwards Added HHPRED Evidence Accession: 4J2N_C Description: Gp37; Winged-Helix, Doman Swap, Filament, VIRAL; HET: SO4; 2.348A {Mycobacterium phage Pukovnik} Query Range: (1-59) Target Range: (1-55) at 2019-02-07 23:29:25.0
dcedwards changed the gene function to helix-turn-helix DNA binding domain at 2019-02-07 23:29:25.0
dcedwards changed synteny to Strong HHpred alignment to helix or excise protein at 2019-02-07 23:29:25.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-02-02 17:02:19.0
dcedwards Removed Phages DB Evidence Phage Name: DrFeelGood Function: excise at 2019-02-02 17:02:19.0
dcedwards Removed Phages DB Evidence Phage Name: Bigfoot Function: DNA binding domain protein at 2019-02-02 17:02:19.0
dcedwards Removed HHPRED Evidence Accession: 1Y6U_A Description: Excisionase from transposon Tn916; DNA architectural protein, Tyrosine recombinase; NMR {Enterococcus faecalis} Query Range: (1-60) Target Range: (11-67) at 2019-02-02 17:02:19.0
dcedwards Removed HHPRED Evidence Accession: PF09035.9 Description: Tn916-Xis ; Excisionase from transposon Tn916 Query Range: (1-60) Target Range: (10-66) at 2019-02-02 17:02:19.0
faith changed starterator analysis to SS at 2019-01-31 18:07:00.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:41:04.0
dcedwards changed the gene function to NKF at 2019-01-31 17:40:57.0
dcedwards changed note to  at 2019-01-31 17:40:57.0
dcedwards Added HHPRED Evidence Accession: 1Y6U_A Description: Excisionase from transposon Tn916; DNA architectural protein, Tyrosine recombinase; NMR {Enterococcus faecalis} Query Range: (1-60) Target Range: (11-67) at 2019-01-31 13:06:01.0
dcedwards Added HHPRED Evidence Accession: PF09035.9 Description: Tn916-Xis ; Excisionase from transposon Tn916 Query Range: (1-60) Target Range: (10-66) at 2019-01-31 13:06:01.0
dcedwards changed note to Possibly a excisionase according to HHpred, but also very similar to hypothetical proteins according to Blast. Do not call a protein excise unless you can identify the integrase and the immunity repressor in the phage. at 2019-01-31 13:06:01.0
dcedwards Added Phages DB Evidence Phage Name: Bigfoot Function: DNA binding domain protein at 2019-01-31 13:04:42.0
dcedwards Added Phages DB Evidence Phage Name: Bob3 Function: helix-turn-helix DNA binding protein at 2019-01-31 13:04:42.0
dcedwards Added Phages DB Evidence Phage Name: DrFeelGood Function: excise at 2019-01-31 13:04:42.0
dcedwards changed the gene function to  at 2019-01-31 13:04:42.0
dcedwards changed synteny to  at 2019-01-31 13:04:42.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 04:18:01.0
faith Added NCBI BLAST Evidence Accession: YP_001491720 Query Range: (1-60) Target Range: (1-60) at 2018-12-01 04:18:01.0
faith Added HHPRED Evidence Accession: PF06806.11 Description: DUF1233 ; Putative excisionase (DUF1233) Query Range: (1-60) Target Range: (4-69) at 2018-12-01 04:18:01.0
faith changed note to Start and stop sites are different on PECAAN and the Pfam report. Possibly a excisionase according to HHpred, but also very similar to hypothetical proteins according to Blast. at 2018-12-01 04:18:01.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:18:01.0
malloryb changed the gene function to unknown at 2018-11-06 05:21:53.0

Gene Number: 72
faith changed starterator analysis to SS at 2019-01-31 18:08:54.0
dcedwards Added HHPRED Evidence Accession: PF08628.11 Description: Nexin_C ; Sorting nexin C terminal Query Range: (2-46) Target Range: (38-79) at 2019-01-31 13:08:02.0
dcedwards changed the gene function to NKF at 2019-01-31 13:08:02.0
dcedwards changed synteny to  at 2019-01-31 13:08:02.0
tiffanylujan Added NCBI BLAST Evidence Accession: ATW59853 Query Range: (1-52) Target Range: (1-52) at 2018-12-01 13:01:29.0
tiffanylujan Added Phages DB Evidence Phage Name: Wilkins Function: function unknown at 2018-11-30 09:58:09.0
tiffanylujan changed the gene function to unknown at 2018-11-30 09:58:09.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 09:58:09.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:56:59.0

Gene Number: 73
dcedwards changed note to  at 2019-02-07 23:34:18.0
dcedwards changed synteny to HHPred matches well with Cas4 at 2019-02-07 23:34:18.0
dcedwards Removed NCBI BLAST Evidence Accession: AUX81814 Query Range: (5-274) Target Range: (3-272) at 2019-02-02 17:03:05.0
dcedwards Removed HHPRED Evidence Accession: cd09659 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (13-270) Target Range: (30-270) at 2019-02-02 17:03:05.0
dcedwards Removed HHPRED Evidence Accession: 2VLD_B Description: EXODEOXYRIBONUCLEASE V BETA CHAIN (E.C.3.1.11.5); RECOMBINATION, HELICASE, NUCLEASE, HYDROLASE, DNA; 3.1A {ESCHERICHIA COLI} SCOP: c.52.1.24, c.37.1.19 Query Range: (165-214) Target Range: (157-208) at 2019-02-02 17:03:05.0
faith changed starterator analysis to SS at 2019-01-31 18:10:04.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:41:20.0
dcedwards changed the gene function to RecB-like Exonuclease/helicase at 2019-01-31 13:13:17.0
dcedwards changed note to HHPred matches well with Cas4 at 2019-01-31 13:13:17.0
dcedwards Added HHPRED Evidence Accession: 2VLD_B Description: EXODEOXYRIBONUCLEASE V BETA CHAIN (E.C.3.1.11.5); RECOMBINATION, HELICASE, NUCLEASE, HYDROLASE, DNA; 3.1A {ESCHERICHIA COLI} SCOP: c.52.1.24, c.37.1.19 Query Range: (165-214) Target Range: (157-208) at 2019-01-31 13:12:44.0
dcedwards Added HHPRED Evidence Accession: PF01930.16 Description: Exodeoxyribonuclease 8 (E.C.3.1.11.-); Exonuclease, Recombination, Hydrolase, Nuclease; 2.8A {Escherichia coli} Query Range: (19-271) Target Range: (1-160) at 2019-01-31 13:12:44.0
dcedwards Added Phages DB Evidence Phage Name: Dreamboat Function: RecB-like protein at 2019-01-31 13:10:29.0
dcedwards Added NCBI BLAST Evidence Accession: AUX81814 Query Range: (5-274) Target Range: (3-272) at 2019-01-31 13:10:29.0
dcedwards Added NCBI BLAST Evidence Accession: YP_001994618 Query Range: (1-274) Target Range: (1-274) at 2019-01-31 13:10:29.0
dcedwards Added HHPRED Evidence Accession: cd09659 Description: Cas4_I-A; CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Query Range: (13-270) Target Range: (30-270) at 2019-01-31 13:10:29.0

Gene Number: 74
faith changed starterator analysis to SS at 2019-01-31 18:10:55.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:41:57.0
dcedwards Removed HHPRED Evidence Accession: PF11742.7 Description: DUF3302 ; Protein of unknown function (DUF3302) Query Range: (35-108) Target Range: (4-70) at 2019-01-31 13:18:51.0
dcedwards changed synteny to Same pham as Zeeculate_69 at 2019-01-31 13:17:47.0
dcedwards Added Phages DB Evidence Phage Name: ILeeKay Function: membrane protein at 2019-01-31 13:16:52.0
dcedwards Added CDD Evidence Accession: pfam14373 Query Range: (63-103) Target Range: (2-42) at 2019-01-31 13:16:52.0
dcedwards Added NCBI BLAST Evidence Accession: AEK10562 Query Range: (1-108) Target Range: (1-108) at 2019-01-31 13:16:52.0
dcedwards Added HHPRED Evidence Accession: PF14373.5 Description: Imm_superinfect ; Superinfection immunity protein Query Range: (62-103) Target Range: (1-42) at 2019-01-31 13:16:52.0
dcedwards Added HHPRED Evidence Accession: PF11742.7 Description: DUF3302 ; Protein of unknown function (DUF3302) Query Range: (35-108) Target Range: (4-70) at 2019-01-31 13:16:52.0
dcedwards changed the gene function to T4 Imm-like protein at 2019-01-31 13:16:52.0
dcedwards Added TmHmm evidence at 2019-01-31 13:16:52.0
malloryb changed the gene function to unknown at 2018-11-06 05:34:34.0

Gene Number: 75
dcedwards Removed Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-02-02 17:03:36.0
faith changed starterator analysis to SS at 2019-01-31 18:12:01.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 13:21:42.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 13:21:42.0
dcedwards changed the gene function to NKF at 2019-01-31 13:21:42.0
dcedwards changed note to  at 2019-01-31 13:21:42.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:14:46.0
bristerpostma Added Phages DB Evidence Phage Name: Zephyr Function: function unknown at 2018-11-30 16:14:46.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_001491638 Query Range: (1-131) Target Range: (1-131) at 2018-11-30 16:14:46.0
bristerpostma Added HHPRED Evidence Accession: PF17429.1 Description: GP70 ; Gene 70 protein Query Range: (39-84) Target Range: (2-47) at 2018-11-30 16:14:46.0
bristerpostma changed the gene function to Unknown function at 2018-11-30 16:14:46.0
bristerpostma changed note to Unknown function. Similar to gene 70 protein. at 2018-11-30 16:14:46.0
bristerpostma changed the coding capacity to yes at 2018-11-30 16:14:46.0
cmorgan changed the gene function to RecB-like Exonuclease,helicase at 2018-11-06 05:22:14.0
cmorgan changed the gene function to RecB like protein at 2018-11-06 05:21:29.0

Gene Number: 76
dcedwards changed synteny to This pham is well characterized as an immunity repressor at 2019-02-07 23:35:27.0
faith changed starterator analysis to SS at 2019-01-31 18:13:01.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:42:33.0
dcedwards Added HHPRED Evidence Accession: 5D4Z_1 Description: Repressor; Repressor, DNA BINDING PROTEIN; 2.98A {Salmonella phage SPC32H} Query Range: (13-50) Target Range: (6-46) at 2019-01-31 13:30:00.0
dcedwards changed note to  at 2019-01-31 13:30:00.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: immunity repressor at 2019-01-31 13:24:01.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 13:24:01.0
dcedwards Added HHPRED Evidence Accession: 1LLI_B Description: LAMBDA REPRESSOR (TRIPLE MUTANT)/DNA COMPLEX; PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA; 2.1A {Enterobacteria phage lambda} SCOP: a.35.1.2 Query Range: (12-50) Target Range: (14-57) at 2019-01-31 13:24:01.0
dcedwards changed note to It has an over 99% probability of being a superinfection immunity repressor, used to keep another infection from being established in the host after the inital phage infection. at 2019-01-31 13:24:01.0
dcedwards changed synteny to  at 2019-01-31 13:24:01.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 04:26:08.0
faith Added NCBI BLAST Evidence Accession: YP_002224012 Query Range: (1-170) Target Range: (1-170) at 2018-12-01 04:26:08.0
faith changed the gene function to immunity repressor at 2018-12-01 04:26:08.0
faith changed note to Start and stop sites are different on PECAAN and the Pfam report. It has an over 99% probability of being a superinfection immunity repressor, used to keep another infection from being established in the host after the inital phage infection. at 2018-12-01 04:26:08.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:26:08.0
elizabethbloodworth changed the gene function to membrane protein at 2018-11-06 05:22:13.0

Gene Number: 77
faith changed starterator analysis to SS at 2019-01-31 18:16:14.0
dcedwards Added Phages DB Evidence Phage Name: JC27 Function: function unknown at 2019-01-31 13:31:14.0
dcedwards Added NCBI BLAST Evidence Accession: AEK09272 Query Range: (1-94) Target Range: (1-94) at 2019-01-31 13:31:14.0
dcedwards Added HHPRED Evidence Accession: PF07172.10 Description: GRP ; Glycine rich protein family Query Range: (1-26) Target Range: (1-26) at 2019-01-31 13:31:14.0
dcedwards changed the gene function to NKF at 2019-01-31 13:31:14.0
tiffanylujan Removed Phages DB Evidence Phage Name: JC27 Function: function unknown at 2018-12-01 13:01:58.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AEK09272 Query Range: (1-94) Target Range: (1-94) at 2018-12-01 13:01:58.0
tiffanylujan Added Phages DB Evidence Phage Name: JC27 Function: function unknown at 2018-11-30 10:04:37.0
tiffanylujan Added NCBI BLAST Evidence Accession: AEK09272 Query Range: (1-94) Target Range: (1-94) at 2018-11-30 10:04:37.0
tiffanylujan changed synteny to Hypothetical Protein at 2018-11-30 09:59:18.0
tiffanylujan changed the coding capacity to yes at 2018-11-30 09:58:56.0
cmorgan changed note to hypothetical protein at 2018-11-06 05:40:47.0
cmorgan changed the gene function to Unknown function at 2018-11-06 05:40:17.0
cmorgan changed the gene function to unknown at 2018-11-06 05:27:38.0

Gene Number: 78
faith changed starterator analysis to SS at 2019-01-31 18:18:03.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:47:09.0
dcedwards Added Phages DB Evidence Phage Name: JC27 Function: function unknown at 2019-01-31 13:32:32.0
dcedwards Added NCBI BLAST Evidence Accession: AEK09273 Query Range: (1-43) Target Range: (37-79) at 2019-01-31 13:32:32.0
dcedwards Added HHPRED Evidence Accession: PF10680.8 Description: RRN9 ; RNA polymerase I specific transcription initiation factor Query Range: (29-37) Target Range: (47-55) at 2019-01-31 13:32:32.0
dcedwards changed the gene function to NKF at 2019-01-31 13:32:32.0
elizabethbloodworth changed the gene function to immunity repressor at 2018-11-06 05:23:49.0

Gene Number: 80
faith changed starterator analysis to SS at 2019-01-31 18:25:53.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:50:57.0
dcedwards Added Phages DB Evidence Phage Name: KSSJEB Function: function unknown at 2019-01-31 13:40:50.0
dcedwards changed the gene function to NKF at 2019-01-31 13:40:50.0
bristerpostma Added NCBI BLAST Evidence Accession: AEK10566 Query Range: (1-42) Target Range: (13-54) at 2018-11-30 16:15:50.0
bristerpostma Added HHPRED Evidence Accession: PF04475.11 Description: DUF555 ; Protein of unknown function (DUF555) Query Range: (3-15) Target Range: (83-95) at 2018-11-30 16:15:50.0
bristerpostma changed the gene function to unknown function at 2018-11-30 16:15:50.0
brendansibley changed the gene function to unknown at 2018-11-06 05:34:02.0
brendansibley changed the gene function to  at 2018-11-06 05:33:20.0
brendansibley changed the gene function to membrane protein at 2018-11-06 05:33:04.0

Gene Number: 81
faith changed starterator analysis to SS at 2019-01-31 18:26:19.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:53:05.0
dcedwards changed note to  at 2019-01-31 17:51:19.0
dcedwards Added Phages DB Evidence Phage Name: Doom Function: function unknown at 2019-01-31 13:42:17.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 13:42:17.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009012760 Query Range: (1-55) Target Range: (35-89) at 2019-01-31 13:42:17.0
dcedwards Added HHPRED Evidence Accession: 2MJ9_A Description: Exendin-4; alpha helix, Trp-cage, TOXIN; NMR {Heloderma suspectum} Query Range: (21-54) Target Range: (1-34) at 2019-01-31 13:42:17.0
dcedwards changed the gene function to NKF at 2019-01-31 13:42:17.0
dcedwards changed synteny to  at 2019-01-31 13:42:17.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 04:31:47.0
faith changed note to Start and stop sites vary on Pfam report and PECAAN. at 2018-12-01 04:31:47.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:31:47.0
taylorwommack changed the gene function to unknown at 2018-11-06 05:41:48.0

Gene Number: 82
faith changed starterator analysis to SS at 2019-01-31 18:26:50.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:53:38.0
dcedwards Added Phages DB Evidence Phage Name: Arlo Function: function unknown at 2019-01-31 13:43:10.0
dcedwards Added NCBI BLAST Evidence Accession: AVJ51342 Query Range: (1-66) Target Range: (1-66) at 2019-01-31 13:43:10.0
dcedwards Added HHPRED Evidence Accession: 2KHJ_A Description: 30S ribosomal protein S1; ribosomal protein S1, OB fold; NMR {Escherichia coli} Query Range: (12-22) Target Range: (4-14) at 2019-01-31 13:43:10.0
dcedwards changed the gene function to NKF at 2019-01-31 13:43:10.0
tiffanylujan Removed Phages DB Evidence Phage Name: U2 Function: function unknown at 2018-12-01 13:04:16.0
tiffanylujan Removed Phages DB Evidence Phage Name: Rohr Function: function unknown at 2018-12-01 13:04:16.0
tiffanylujan Removed NCBI BLAST Evidence Accession: AVJ51342 Query Range: (1-66) Target Range: (1-66) at 2018-12-01 13:04:16.0
tiffanylujan Added Phages DB Evidence Phage Name: U2 Function: function unknown at 2018-11-30 10:05:35.0
tiffanylujan Added Phages DB Evidence Phage Name: Rohr Function: function unknown at 2018-11-30 10:05:35.0
tiffanylujan Added NCBI BLAST Evidence Accession: AVJ51342 Query Range: (1-66) Target Range: (1-66) at 2018-11-30 10:05:35.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 10:05:35.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 10:05:35.0

Gene Number: 83
faith changed starterator analysis to SS at 2019-01-31 18:27:41.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:54:02.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 13:44:10.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009016350 Query Range: (1-62) Target Range: (1-62) at 2019-01-31 13:44:10.0
dcedwards Added HHPRED Evidence Accession: PF11239.7 Description: DUF3040 ; Protein of unknown function (DUF3040) Query Range: (1-55) Target Range: (3-58) at 2019-01-31 13:44:10.0
dcedwards changed the gene function to NKF at 2019-01-31 13:44:10.0

Gene Number: 84
faith changed starterator analysis to SS at 2019-01-31 18:29:32.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:54:45.0
dcedwards Added Phages DB Evidence Phage Name: Doom Function: function unknown at 2019-01-31 13:48:32.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008858622 Query Range: (1-55) Target Range: (1-55) at 2019-01-31 13:48:32.0
dcedwards Added HHPRED Evidence Accession: PF17327.1 Description: AHL_synthase ; Acyl homoserine lactone synthase Query Range: (1-13) Target Range: (141-153) at 2019-01-31 13:48:32.0
dcedwards changed the gene function to NKF at 2019-01-31 13:48:32.0
leahdowell changed the gene function to unknown at 2018-11-30 09:15:11.0

Gene Number: 85
faith changed starterator analysis to SS at 2019-01-31 18:30:12.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:55:18.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 14:39:46.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 14:39:46.0
dcedwards changed the gene function to NKF at 2019-01-31 14:39:46.0
dcedwards changed note to  at 2019-01-31 14:39:46.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:18:00.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009209468 Query Range: (1-139) Target Range: (9-147) at 2018-11-30 16:18:00.0
bristerpostma Added HHPRED Evidence Accession: 3V7D_B Description: Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex; 2.306A {Saccharomyces cerevisiae} Query Range: (15-74) Target Range: (8-59) at 2018-11-30 16:18:00.0
bristerpostma changed the gene function to Function unknown at 2018-11-30 16:18:00.0
bristerpostma changed note to Unknown protein. Possible Suppressor of kinetochore protein 1 at 2018-11-30 16:18:00.0

Gene Number: 86
faith changed starterator analysis to SS at 2019-01-31 18:30:42.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:55:37.0
dcedwards Added Phages DB Evidence Phage Name: Bircsak Function: function unknown at 2019-01-31 14:41:01.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 14:41:01.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009291323 Query Range: (1-68) Target Range: (1-68) at 2019-01-31 14:41:01.0
dcedwards Added HHPRED Evidence Accession: PF10028.8 Description: DUF2270 ; Predicted integral membrane protein (DUF2270) Query Range: (37-63) Target Range: (34-67) at 2019-01-31 14:41:01.0
dcedwards changed the gene function to NKF at 2019-01-31 14:41:01.0
dcedwards changed note to  at 2019-01-31 14:41:01.0
dcedwards changed synteny to  at 2019-01-31 14:41:01.0
faith Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-12-01 04:36:45.0
faith changed the gene function to Unknown at 2018-12-01 04:36:45.0
faith changed note to Start and stop sites are different on Pfam report and PECAAN at 2018-12-01 04:36:45.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:36:45.0

Gene Number: 87
faith changed starterator analysis to SS at 2019-01-31 18:31:14.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:56:16.0
dcedwards Added HHPRED Evidence Accession: PF11305.7 Description: DUF3107 ; Protein of unknown function (DUF3107) Query Range: (22-43) Target Range: (37-58) at 2019-01-31 14:41:49.0
dcedwards changed the gene function to NKF at 2019-01-31 14:41:49.0
dcedwards changed synteny to  at 2019-01-31 14:41:49.0
tiffanylujan Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-11-30 10:07:01.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009012766 Query Range: (1-49) Target Range: (1-49) at 2018-11-30 10:07:01.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 10:07:01.0
tiffanylujan changed synteny to Hypothetical Protein at 2018-11-30 10:07:01.0

Gene Number: 88
faith changed starterator analysis to SS at 2019-01-31 18:31:54.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:56:53.0
dcedwards Added Phages DB Evidence Phage Name: Lamina13 Function: function unknown at 2019-01-31 14:42:31.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009032135 Query Range: (1-111) Target Range: (1-111) at 2019-01-31 14:42:31.0
dcedwards Added HHPRED Evidence Accession: 4NE3_A Description: Centromere protein S, Centromere protein; Histone fold, DNA repair, genome; 1.8007A {Homo sapiens} Query Range: (31-94) Target Range: (7-70) at 2019-01-31 14:42:31.0
dcedwards changed the gene function to NKF at 2019-01-31 14:42:31.0

Gene Number: 89
faith changed starterator analysis to SS at 2019-01-31 18:33:31.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:58:35.0
dcedwards Added Phages DB Evidence Phage Name: Nerujay Function: function unknown at 2019-01-31 14:43:42.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009210441 Query Range: (2-62) Target Range: (1-61) at 2019-01-31 14:43:42.0
dcedwards Added HHPRED Evidence Accession: 3P8D_B Description: Medulloblastoma antigen MU-MB-50.72; Tudor domain, LYSINE-METHYLATED P53 BINDING; 2.0A {Homo sapiens} Query Range: (1-55) Target Range: (3-54) at 2019-01-31 14:43:42.0
dcedwards changed the gene function to NKF at 2019-01-31 14:43:42.0
leahdowell changed the gene function to unknown at 2018-11-30 09:14:59.0

Gene Number: 90
faith changed starterator analysis to SS at 2019-01-31 18:34:13.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:59:16.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008531071 Query Range: (1-27) Target Range: (13-39) at 2019-01-31 14:49:17.0
dcedwards Added HHPRED Evidence Accession: PF02468.14 Description: PsbN ; Photosystem II reaction centre N protein (psbN) Query Range: (1-23) Target Range: (1-23) at 2019-01-31 14:49:17.0
dcedwards changed the gene function to NKF at 2019-01-31 14:49:17.0
dcedwards changed note to  at 2019-01-31 14:49:17.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 14:48:02.0
dcedwards changed the start site to 51653 at 2019-01-31 14:44:47.0
bristerpostma changed note to Unknown function. Possible PHD FINGER PROTEIN 19 at 2018-11-30 16:21:48.0
bristerpostma Added Phages DB Evidence Phage Name: Violet Function: function unknown at 2018-11-30 16:20:34.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_009012774 Query Range: (1-34) Target Range: (6-39) at 2018-11-30 16:20:34.0
bristerpostma Added HHPRED Evidence Accession: PF02468.14 Description: PsbN ; Photosystem II reaction centre N protein (psbN) Query Range: (8-30) Target Range: (1-23) at 2018-11-30 16:20:34.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:20:34.0
bristerpostma changed note to Unknown function. at 2018-11-30 16:20:34.0

Gene Number: 91
faith changed starterator analysis to SS at 2019-01-31 18:36:07.0
dcedwards changed the coding capacity to yes at 2019-01-31 17:59:49.0
dcedwards changed synteny to Abrogate and Phrostymug also have forward reading genes at this position. at 2019-01-31 14:55:00.0
dcedwards Added Phages DB Evidence Phage Name: Wilkins Function: function unknown at 2019-01-31 14:54:14.0
dcedwards Added NCBI BLAST Evidence Accession: YP_008058832 Query Range: (1-51) Target Range: (1-51) at 2019-01-31 14:54:14.0
dcedwards Added HHPRED Evidence Accession: PF06222.10 Description: Phage_TAC_1 ; Phage tail assembly chaperone Query Range: (1-29) Target Range: (1-33) at 2019-01-31 14:54:14.0
dcedwards changed the gene function to NKF at 2019-01-31 14:54:14.0
dcedwards changed note to  at 2019-01-31 14:54:14.0
dcedwards changed synteny to  at 2019-01-31 14:54:14.0
faith changed the gene function to Unknown at 2018-12-01 04:39:41.0
faith changed note to Start and stop sites are different on Pfam report and PECAAN at 2018-12-01 04:39:41.0
faith changed synteny to Hypothetical protein of unknown function at 2018-12-01 04:39:41.0

Gene Number: 92
faith changed starterator analysis to SS at 2019-01-31 18:36:32.0
dcedwards changed the coding capacity to yes at 2019-01-31 18:00:18.0
dcedwards changed the gene function to NKF at 2019-01-31 14:58:57.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 14:58:45.0
dcedwards Removed Phages DB Evidence Phage Name: RidgeCB Function: function unknown at 2019-01-31 14:58:45.0
dcedwards changed the gene function to nkf at 2019-01-31 14:58:45.0
dcedwards changed synteny to Abrogate and Phrostymug also have forward reading genes at this position. at 2019-01-31 14:58:45.0
tiffanylujan Added Phages DB Evidence Phage Name: RidgeCB Function: function unknown at 2018-12-01 13:06:14.0
tiffanylujan Added NCBI BLAST Evidence Accession: YP_009014257 Query Range: (1-68) Target Range: (1-68) at 2018-11-30 10:09:30.0
tiffanylujan Added HHPRED Evidence Accession: PF17463.1 Description: Gp79 ; Gene Product 79 Query Range: (17-68) Target Range: (1-51) at 2018-11-30 10:09:30.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 10:09:30.0
tiffanylujan changed synteny to Hypothetical protein at 2018-11-30 10:09:30.0

Gene Number: 93
faith changed starterator analysis to SS at 2019-01-31 18:36:55.0
dcedwards changed the coding capacity to no at 2019-01-31 18:02:51.0
dcedwards Added Phages DB Evidence Phage Name: Solon Function: function unknown at 2019-01-31 15:00:06.0
dcedwards Added NCBI BLAST Evidence Accession: YP_002224025 Query Range: (1-54) Target Range: (1-54) at 2019-01-31 15:00:06.0
dcedwards Added HHPRED Evidence Accession: PF10003.8 Description: DUF2244 ; Integral membrane protein (DUF2244) Query Range: (4-28) Target Range: (113-139) at 2019-01-31 15:00:06.0
dcedwards changed the gene function to NKF at 2019-01-31 15:00:06.0
dcedwards changed synteny to Abrogate and Phrostymug also have forward reading genes at this position. at 2019-01-31 15:00:06.0

Gene Number: 95
faith changed starterator analysis to SS at 2019-01-31 18:37:58.0
dcedwards changed note to  at 2019-01-31 18:04:39.0
dcedwards changed the coding capacity to yes at 2019-01-31 18:04:39.0
dcedwards Added Phages DB Evidence Phage Name: Abrogate Function: function unknown at 2019-01-31 15:03:46.0
dcedwards Removed Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2019-01-31 15:03:46.0
dcedwards changed the gene function to NKF at 2019-01-31 15:03:46.0
dcedwards changed synteny to Abrogate and Phrostymug also have forward reading genes at this position. at 2019-01-31 15:03:46.0
bristerpostma Added Phages DB Evidence Phage Name: Zeuska_Draft Function: function unknown at 2018-11-30 16:23:19.0
bristerpostma Added NCBI BLAST Evidence Accession: YP_002224026 Query Range: (1-62) Target Range: (1-62) at 2018-11-30 16:23:19.0
bristerpostma Added HHPRED Evidence Accession: cd07551 Description: P-type_ATPase_HM_ZosA_PfeT-like; P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron. Query Range: (2-62) Target Range: (120-195) at 2018-11-30 16:23:19.0
bristerpostma changed the gene function to Unknown Function at 2018-11-30 16:23:19.0
bristerpostma changed note to Function unknown. Possible P-type_ATPase. at 2018-11-30 16:23:19.0

Gene Number: 96
dcedwards Removed HHPRED Evidence Accession: 3JD5_o Description: bovine mitochondrial ribosome small subunit; mitoribosome, mammalian 55S mitoribosome, protein;{Bos taurus} Query Range: (30-44) Target Range: (2-16) at 2019-02-02 17:08:20.0
faith changed starterator analysis to SS at 2019-01-31 18:38:19.0
dcedwards changed the coding capacity to no at 2019-01-31 18:06:16.0
dcedwards Added Phages DB Evidence Phage Name: Nerujay Function: function unknown at 2019-01-31 15:05:08.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009210447 Query Range: (1-49) Target Range: (1-49) at 2019-01-31 15:05:08.0
dcedwards Added HHPRED Evidence Accession: 3JD5_o Description: bovine mitochondrial ribosome small subunit; mitoribosome, mammalian 55S mitoribosome, protein;{Bos taurus} Query Range: (30-44) Target Range: (2-16) at 2019-01-31 15:05:08.0
dcedwards Added HHPRED Evidence Accession: d4htga2 Description: d.50.2.0 (A:232-311) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Query Range: (6-37) Target Range: (2-33) at 2019-01-31 15:05:08.0
dcedwards changed the gene function to NKF at 2019-01-31 15:05:08.0

Gene Number: 97
faith changed starterator analysis to SS at 2019-01-31 18:38:39.0
dcedwards changed the coding capacity to no at 2019-01-31 18:06:52.0
dcedwards Added Phages DB Evidence Phage Name: Nerujay Function: function unknown at 2019-01-31 15:11:42.0
dcedwards Added NCBI BLAST Evidence Accession: YP_009210448 Query Range: (1-62) Target Range: (1-62) at 2019-01-31 15:11:42.0
dcedwards Added HHPRED Evidence Accession: PF09125.9 Description: COX2-transmemb ; Cytochrome C oxidase subunit II, transmembrane Query Range: (36-46) Target Range: (15-25) at 2019-01-31 15:11:42.0
dcedwards changed the gene function to NKF at 2019-01-31 15:11:42.0
tiffanylujan changed the gene function to Uknown at 2018-11-30 10:15:37.0